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Change setup for the blast filtering before exonerate

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Former-commit-id: 139685eca58c1fb2272854dee31de3821c54af80
Former-commit-id: dc5c345ce72e9895cbdcc3321499b869040a24da
This commit is contained in:
Eric Coissac
2022-02-17 18:41:27 +01:00
parent 3b584dbebd
commit 9d93a68b3a
3 changed files with 26 additions and 18 deletions
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13
detectors/cds/params/default
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@@ -15,13 +15,14 @@ AssignUndef TMP_CLEANUP 1
# pass1: exonerate speedup
#
AssignUndef PASS1_SPEEDUP 1
AssignUndef PASS1_SLOWDOWN 0
AssignUndef PASS1_SLOWDOWN 5
AssignUndef PASS1_BLASTX_FILTER_IDMIN 80
AssignUndef PASS1_BLASTX_FILTER_NBMIN 20
AssignUndef PASS1_BLASTX_FILTER_NBMAX 50
AssignUndef PASS1_BLASTX_FILTER_COMIN 0.8
AssignUndef PASS1_BLASTX_FILTER_GCODE 11
AssignUndef PASS1_BLASTX_FILTER_MINLEN 100
AssignUndef PASS1_BLASTX_FILTER_IDMIN 50
AssignUndef PASS1_BLASTX_FILTER_NBMIN 20
AssignUndef PASS1_BLASTX_FILTER_NBMAX 20
AssignUndef PASS1_BLASTX_FILTER_COMIN 0.8
AssignUndef PASS1_BLASTX_FILTER_GCODE 11
#
# pass1: exonerate parameters