Files
annotate/data/rrna/RRNA_16S/00003_RRNA16S_NC_005353_380.align.fasta
Eric Coissac 01c5880ace First version including the rRNA detector
Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
2015-10-12 07:15:08 -03:00

79 lines
4.8 KiB
Plaintext

>RRNA16S_NC_021109_381 count=1; cluster_weight=3; cluster=RRNA16S_NC_005353_380; cluster_score=0.938748; cluster_center=False;
ATCCATGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCATGCTTAACACATGCA
AGTCGAACGAGCATTAAATTTTTAA-TGTGTAGTGGCGAACGGGTGCGTAACGCGTAAGA
ACCTACCTATCGGAGGGGGATAACATTGGGAAACTGTTGCTAATACCCCATAAAAGCTGA
GGAGTGAAAGGTGTAAAACCGCCGATAGAGGGGCTTGCGTCTGATTAGCTAGTTGGAGGG
GGTAATGGCCTCCCAAGGCCACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTG
GGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGAGGAATTTTTCGCAATGGG
CGAAAGCCTGACGAAGCAATGCCGCGTGCAGGAAGAAGGCCTGTGGGTCGTAAACTGCTT
TTCTTAGAGAAGAAGTTCTGACGGTATCTGAGGAATAAGCACCGGCTAACCCTGTGCCAG
CAGCCGCGGTAATACAGGGGGTGCAAGCGTTGTCCGGAATGATTGGGCGTAAAGCGTCTG
TAGGTGGCTCGTAAAGTCTAATGTCAAATACCAGGGCTCAACCTTGGATCGGCATTAGAG
CACTCACGAGCTTGAGTACGGTAGAGGCAGAGGGAACTCCAAGTGGAGCGGTGAAATGCG
TAGAGATTTGGAAGAACACCAGAGGCGAAGGCGCTCTGCTGGGCCGAAACTGACACTGAG
AGACGAAAGCTGGGGGAGCGAATAGGATTAGATACCCTAGTAGTCCCAGCCGTAAACTAT
GGAGACTAAGTGCTGC-CTCAAGCAGTGCTGTAGCTAACGCGTTAAGTCTCCCGCCTGGG
GAGTATGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGAGGTGGAT
TATGTGGATTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACT
TCCCAGAAATGGGAGGGTGCCCTAACGGGAGCTTGAACACAGGTGGTGCATGGCTGTCGT
CAGCTCGTGCCGTGAGGTGTATAGTTAAGTCTCATAACGAGCGCAACCCTCGTCTTTAGT
TGCCATTTGGTTCTCTAAAGAGACTGCCAGTGTAAGCTGGAGGAAGGTGAGGATGACGTC
AAGTCAGCATGCCCCTTACACCCTGGGCTTCACACGTAATACAATGGTTGGGACAATCAG
AAGCGATCTCGTGAGAGCTAGCGGATCTGTTAAACCCAACCTCAGTTCGGATTGTAGGCT
GCAACTCGCCTCCATGAAGCCGGAATCTCTAGTAATCGCCAGTCAGCTATATGGCGGTGA
ATACGTTCCCGGGTCTTGTACACACCGCCCGTCACAGGCCGAAAATTAACTCAACTTTAA
GCAGTGAGCTGAACCTGCTTTGCAGGACGGGAGCTACCACAGTGGGGTTAGTAATTGATC
TGAAGTCGTAACAAGGTAGGGCTACTGGAAGGTGGCCCTGGATCACCTCCTTC
>RRNA16S_NC_005353_380 count=1; cluster_weight=3; cluster=RRNA16S_NC_005353_380; cluster_score=1.000000; cluster_center=True;
ATCCATGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCATGCTTAACACATGCA
AGTCGAACGAGCAAAGCAATT-----TGTGTAGTGGCGAACGGGTGCGTAACGCGTAAGA
ACCTACCTATCGGAGGGGGATAACATTGGGAAACTGTTGCTAATACCCCAT-ACAGCTGA
GGAGTGAAAGGTGAAAAACCGCCGATAGAGGGGCTTGCGTCTGATTAGCTAGTTGGTGGG
GGTAACGGCCTCCCAAGGCCACGAGCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTG
GGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGAGGAATTTTTCGCAATGGG
CGCAAGC--GACGGAGCAATGCCGCGTGCAGGAAGAAGGCCTGTGGGTCGTAAACTGCTT
TTCTCAGAGAAGAAGTTCTGACGGTATCTGAGGAATAAGCACCGGCTAACTCTGTGCCAG
CAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTCCGCAATGATTGGGCGTAAAGCGTCTG
TAGGTGGCTCGTAAAGTCTAATGTCAAATACCAGGGCTCAACCTTGGACCGGCATTGGAG
TACTCACGAGCTTGAGTACGGTAGGGGCAGAGGGAATTCCATGTGGAGCGGTGAAATGCG
TAGAGATATGGAGGAACACCAGTGGCGAAGGCGCTCTGCTGGGCCGAAACTGACACTGAG
AGACGAAAGCTGGGGGAGCGAATAGGATTAGATACCCTAGTAGTCCCAGCCGTAAACTAT
GGAGACTAAGTGCTGC-CGCAAGCAGTGCTGTAGCTAACGCGTTAAGTCTCCCGCCTGGG
GAGTATGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGA--CCGCACAAGCGGTGGAT
TATGTGGATTAATTCGATACAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACC
TCTCAGAAATGGGAGGGTGCCCTAACGG--ACTTGAACACAGGTGGTGCATGGCTGTCGT
CAGCTCGTGCTGTGAAGTGTATAGTTAAGTCTCATAACGAGCGCAACCCTCGTCTTTAGT
TGCCATTTGGTTCTCTAAAGAGACTGCCAGTGTAAGCTGGAGGAAGGTGAGGATGACGTC
AAGTCAGCATGCCCCTTACATCCTGGGCTTCACACGTAATACAATGGTTGGGACAATCAG
AAGCGA-CTCGTGAGAGCTAGCGGCTCTGTTAAACCCAACCTCAGTTCGGATTGTAGGCT
GCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGTGA
ATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGAAGCTGGTTCTGCTCCAA
GTCGTTACCCTAACC-----TTCGGGAGGGGGGCGCCTAAAGCAGGGCTAGTGACTAGGG
TGAAGTCGTAACAAGGTAGGGCTACTGGAAGGTGGCCCTGGCTCACCTCCTTC
>RRNA16S_NC_020438_382 count=1; cluster_weight=3; cluster=RRNA16S_NC_005353_380; cluster_score=0.964453; cluster_center=False;
ATCCATGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCATGCTTAACACATGCA
AGTCGAACGAGCATTTCATTCTGAAATGTGTAGTGGCGAACGGGTGCGTAACGCGTAAGA
ACCTACCTATCGGAGGGGGATAACATTGGGAAACTGTTGCTAATACCCCATAAAAGCTGA
GGAGTGAAAGGTT-AAAACCGCCGATAGAGGGGCTTGCGTCTGATTAGCTAGTTGGTGGG
GGTAATGGCCTCCCAAGGCCACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTG
GGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGAGGAATTTTTCGCAATGGG
CGAAAGCCTGACGAAGCAATGCCGCGTGCAGGTAGAAGGCCTGTGGGTTGTAAACTGCTT
TTCTCAGAGAAGAAGTTCTGACGGTATCTGAGGAATAAGCACCGGCTAACTCTGTGCCAG
CAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTCCGGAATGATTGGGCGTAAAGCGTCTG
TAGGTGGCTCGTAAAGTCTAATGTCAAATACCAGGGCTCAACCTTGGATCGGCATTGGAG
CACTCACGAGCTTGAGTACGGTAGAGGCAGAGGGAATTCCAAGTGGAGCGGTGAAATGCG
TAGAGATTTGGAGGAACACCAGTGGCGAAGGCGCTCTGCTGGGCCGAAACTGACACTGAG
AGACGAAAGCTGGGGGAGCGAATAGGATTAGATACCCTAGTAGTCCCAGCCGTAAACTAT
GGAGACTAAGTGCTGCTTTTTTGCAGTGCTGTAGCTAACGCGTTAAGTCTCCCGCCTGGG
GAGTATGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAT
TATGTGGATTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACT
CTTCAGAAATGGGGAGGTGCCCTAACGGGAACTTGAACACAGGTGGTGCATGGCTGTCGT
CAGCTCGTGCTGTGAAGTGTATAGTTAAGTCTCATAACGAGCGCAACCCTCGTCTTTAGT
TGCCATTTGGTTCTCTAAAGAGACTGCCAGTGTAAGCTGGAGGAAGGTGAGGATGACGTC
AAGTCAGCATGCCCCTTACACCCTGGGCTTCACACGTAATACAATGGTTGGGACAATCAG
AAGCGATCTCGTGAGAGCTAGCGGATCTGTGAAACCCAACCTCAGTTCGGATTGTAGGCT
GCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGTGA
ATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCCCGGAAGCTGGTTCTGCTCCAA
GTCGTTACCCTAACC----TTTTTGGAGGGGGGCGCCTAAAGCAGGGCTAGTGACCAGGG
TGAAGTCGTAACAAGGTAGGGCTACTGGAAGGTGGCCCTGGATCACCTCCTTC