coissac
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  • Joined on 2025-05-22
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coissac deleted branch push-zrlrptrsrlkk from OBIKmers/obikmer 2026-05-22 07:36:13 +00:00
coissac pushed to main at OBIKmers/obikmer 2026-05-22 07:36:13 +00:00
3d58a32613 Merge pull request 'feat: introduce genome metadata tracking and CSV export' (#2) from push-zrlrptrsrlkk into main
0f8f61d3dd feat: introduce genome metadata tracking and CSV export
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coissac merged pull request OBIKmers/obikmer#2 2026-05-22 07:36:11 +00:00
feat: introduce genome metadata tracking and CSV export
coissac created pull request OBIKmers/obikmer#2 2026-05-22 07:36:02 +00:00
feat: introduce genome metadata tracking and CSV export
coissac created branch push-zrlrptrsrlkk in OBIKmers/obikmer 2026-05-22 07:35:50 +00:00
coissac pushed to push-zrlrptrsrlkk at OBIKmers/obikmer 2026-05-22 07:35:50 +00:00
0f8f61d3dd feat: introduce genome metadata tracking and CSV export
coissac pushed to main at OBIKmers/obikmer 2026-05-21 16:57:20 +00:00
77a0186fae Merge pull request 'Push qkpyqurltlpk' (#1) from push-qkpyqurltlpk into main
13599dd444 feat: Implement query subcommand for sequence-to-genome mapping
c8e591fc78 feat: add superkmer CLI setup and partition bit handling
d9aa211b8f feat: add k-mer index rebuild and compaction feature
3fa1dbf8cc feat: add pairwise distance computation and phylogenetic trees
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coissac deleted branch push-qkpyqurltlpk from OBIKmers/obikmer 2026-05-21 16:57:20 +00:00
coissac merged pull request OBIKmers/obikmer#1 2026-05-21 16:57:19 +00:00
Push qkpyqurltlpk
coissac created pull request OBIKmers/obikmer#1 2026-05-21 16:57:09 +00:00
Push qkpyqurltlpk
coissac pushed to push-qkpyqurltlpk at OBIKmers/obikmer 2026-05-21 16:56:51 +00:00
13599dd444 feat: Implement query subcommand for sequence-to-genome mapping
c8e591fc78 feat: add superkmer CLI setup and partition bit handling
d9aa211b8f feat: add k-mer index rebuild and compaction feature
3fa1dbf8cc feat: add pairwise distance computation and phylogenetic trees
9e1d6f2f25 feat: implement partition-based merge command for k-mer indices
Compare 10 commits »
coissac created branch push-qkpyqurltlpk in OBIKmers/obikmer 2026-05-21 16:56:51 +00:00
coissac pushed to main at OBIKmers/obikmer 2026-05-20 16:55:42 +00:00
17c9e076bd refactor: extract obikindex crate and remove deprecated CLI commands
f8cfb493b8 refactor: extract pipeline stages and centralize partition directory paths
cc2ed4bd31 feat: Add progress tracking and timing instrumentation to index
e66c4d81ef feat(obikmer): add index subcommand for kmer counting pipeline
c20a1ed465 perf: optimize k-mer pipeline with compile-time tables
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coissac created branch main in OBIKmers/obikmer 2026-05-20 16:55:42 +00:00
coissac created repository OBIKmers/obikmer 2026-05-20 16:32:45 +00:00
coissac pushed to master at MetabarcodingSchool/OBIJupyterHub 2026-05-12 06:12:15 +00:00
e3c46e4922 Merge pull request 'ci: enforce strict registry auth and optimize quarto builds' (#12) from push-qwnmlsqumxul into master
ca986633b1 Add the freeze option to quarto
19e9bba3cc ???
0d75c08f6a ci: enforce strict registry auth and optimize quarto builds
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coissac deleted branch push-qwnmlsqumxul from MetabarcodingSchool/OBIJupyterHub 2026-05-12 06:12:15 +00:00
coissac merged pull request MetabarcodingSchool/OBIJupyterHub#12 2026-05-12 06:12:15 +00:00
ci: enforce strict registry auth and optimize quarto builds
coissac created pull request MetabarcodingSchool/OBIJupyterHub#12 2026-05-12 06:11:55 +00:00
ci: enforce strict registry auth and optimize quarto builds
coissac created branch push-qwnmlsqumxul in MetabarcodingSchool/OBIJupyterHub 2026-05-12 06:11:44 +00:00