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install issue #2

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opened 2021-02-19 16:16:46 +00:00 by youri.lammers · 1 comment
youri.lammers commented 2021-02-19 16:16:46 +00:00 (Migrated from git.metabarcoding.org)
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** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import ‘ROBITaxonomy::path’ by ‘igraph::path’ when loading ‘ROBITools’
Warning: replacing previous import ‘ROBITaxonomy::parent’ by ‘igraph::parent’ when loading ‘ROBITools’
Creating a new generic function for ‘normalize’ in package ‘ROBITools’
Note: possible error in 'diversity(x.otu, "invsimpson", ': unused argument (MARGIN = 1) 
** help
Error : (converted from warning) /tmp/RtmpnXQnO8/R.INSTALL2e223303ea11/ROBITools/man/const-threshold-mask-methods.Rd:28: unknown macro '\item'
ERROR: installing Rd objects failed for package ‘ROBITools’
* removing ‘/usr/local/lib/R/site-library/ROBITools’
Error: Failed to install 'unknown package' from Git:
  (converted from warning) installation of package ‘/tmp/Rtmp2xhLcT/file41bf7f8f656/ROBITools_0.1.tar.gz’ had non-zero exit status
>
``` ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import ‘ROBITaxonomy::path’ by ‘igraph::path’ when loading ‘ROBITools’ Warning: replacing previous import ‘ROBITaxonomy::parent’ by ‘igraph::parent’ when loading ‘ROBITools’ Creating a new generic function for ‘normalize’ in package ‘ROBITools’ Note: possible error in 'diversity(x.otu, "invsimpson", ': unused argument (MARGIN = 1) ** help Error : (converted from warning) /tmp/RtmpnXQnO8/R.INSTALL2e223303ea11/ROBITools/man/const-threshold-mask-methods.Rd:28: unknown macro '\item' ERROR: installing Rd objects failed for package ‘ROBITools’ * removing ‘/usr/local/lib/R/site-library/ROBITools’ Error: Failed to install 'unknown package' from Git: (converted from warning) installation of package ‘/tmp/Rtmp2xhLcT/file41bf7f8f656/ROBITools_0.1.tar.gz’ had non-zero exit status > ```
youri.lammers commented 2021-02-19 16:17:20 +00:00 (Migrated from git.metabarcoding.org)
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Reference: obitools/ROBITaxonomy#2
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