Manage sequence circularity

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@166 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2008-04-28 15:49:12 +00:00
parent 4b74056af8
commit d863b7e48e
6 changed files with 134 additions and 51 deletions
--- a/src/libapat/apat.h
+++ b/src/libapat/apat.h
@@ -103,6 +103,7 @@ typedef struct {                        /* sequence             */
    Int32     seqlen;                   /* sequence length      */
    Int32     seqsiz;                   /* sequence buffer size */
    Int32     datsiz;                   /* data buffer size     */
+    Int32     circular;
    UInt8     *data;                    /* data buffer          */
    char      *cseq;                    /* sequence buffer      */
    StackiPtr hitpos[MAX_PATTERN];      /* stack of hit pos.    */