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Initial version of ecoPCR

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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@5 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
Eric Coissac
2007-02-15 13:33:32 +00:00
parent f3d2273d8d
commit ebe8c0b516
39 changed files with 5568 additions and 0 deletions
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r -1acghtgd -2gctcagctagcta /Users/coissac/encours/ecoPCR/tools/ecodb
print put
print out
f ecoPCR
r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
bt
print label1
up
print label1
print (char*)label1
r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
bt
up 3
l
b 38
r
r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
print label
print ranks
print *ranks
print ranks->label +1
print *ranks->label +1
print *(ranks->label +1)
print *(ranks->label +2)
b ecotax.c:147
r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
print current_taxon ;
print current_taxon
n
print current_taxon ;
print current_taxon
print *current_taxon
print taxonomy->taxons[11]
print taxonomy->taxons[2952]
print taxonomy->taxons->taxon[2952]
print taxonomy->ranks->rank[11]
print taxonomy->ranks->label[11]
print taxonomy->ranks->label[3]
b ecotax.c:147
r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
print current_taxon
print *current_taxon
n
print *current_taxon
b ecotax.c:147
r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
n
print *current_taxon
r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
n
print *current_taxon
b ecodna.c:70
r -1GGGCAATCCTGAGCC#A#A# -2CCATTGAGTCTCTGCACCTA#T#C# -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
*sb
print *sb
print sb
print str
b 52
r -1GGGCAATCCTGAGCC#A#A# -2CCATTGAGTCTCTGCACCTA#T#C# -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
print str
r -1GGGCAATCCTGAGCC#A#A# -2CCATTGAGTCTCTGCACCTA#T#C# -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
bt