Change 2 : Change the used rules to define example and counter example taxon sets.
By default all taxa are example taxa and no counterexample taxa are used.
By using -r option (one or several time) you could restict example taxa to a subset of taxa
In old version all taxa not in example set are in the counterexample set.
Now restrict example set with -r option doesn't define the counter example set.
You must use -i to define the conterexample set in a similar way or -r option for example taxa.
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@234 60f365c0-8329-0410-b2a4-ec073aeeaa1d
a. 'salt method' like "-m 1" or "-m 2" here 1 is for SANTALUCIA and 2 is for OWCZARZY
b. 'salt concentration' "-a 0.01" valid range is from 0.01 to 0.3. if not specified then we use default 0.05
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@224 60f365c0-8329-0410-b2a4-ec073aeeaa1d
