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New command: obi taxonomy to add local taxa (closes #64)

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Celine Mercier
2023-02-13 10:59:20 +13:00
parent eeb93afa7d
commit 2130a949c7
6 changed files with 353 additions and 91 deletions
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src/obidms_taxonomy.h
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@@ -239,6 +239,7 @@ OBIDMS_taxonomy_p obi_read_taxonomy(OBIDMS_p dms, const char* taxonomy_name, boo
* @param dms A pointer on the DMS to which the taxonomy belongs.
* @param tax A pointer on the taxonomy structure.
* @param tax_name The name (prefix) of the taxonomy.
* @param update Whether files should be rewritten or if it's a new taxonomy (set to true e.g. after adding local taxa).
*
* @returns An integer value indicating the success of the operation.
* @retval 0 on success.
@@ -247,7 +248,7 @@ OBIDMS_taxonomy_p obi_read_taxonomy(OBIDMS_p dms, const char* taxonomy_name, boo
* @since 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_write_taxonomy(OBIDMS_p dms, OBIDMS_taxonomy_p tax, const char* tax_name);
int obi_write_taxonomy(OBIDMS_p dms, OBIDMS_taxonomy_p tax, const char* tax_name, bool update);
/**