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< a href = "./index.html" class = "sidebar-item-text sidebar-link" > Preface</ a >
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< a href = "./intro.html" class = "sidebar-item-text sidebar-link" >< span class = "chapter-number" > 1</ span > < span class = "chapter-title" > The OBITools</ span ></ a >
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< a href = "./tutorial.html" class = "sidebar-item-text sidebar-link" >< span class = "chapter-number" > 2</ span > < span class = "chapter-title" > OBITools V4 Tutorial</ span ></ a >
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< a href = "./commands.html" class = "sidebar-item-text sidebar-link" >< span class = "chapter-number" > 3</ span > < span class = "chapter-title" > The < em > OBITools V4</ em > commands</ span ></ a >
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< a href = "./library.html" class = "sidebar-item-text sidebar-link" >< span class = "chapter-number" > 4</ span > < span class = "chapter-title" > The GO < em > OBITools</ em > library</ span ></ a >
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< a href = "./annexes.html" class = "sidebar-item-text sidebar-link" >< span class = "chapter-number" > 5</ span > < span class = "chapter-title" > Annexes</ span ></ a >
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< div id = "ref-Boyer2016-gq" class = "csl-entry" role = "doc-biblioentry" >
Boyer, Frédéric, Céline Mercier, Aurélie Bonin, Yvan Le Bras, Pierre
Taberlet, and Eric Coissac. 2016. < span > “< span class = "nocase" > obitools:
a unix-inspired software package for DNA metabarcoding</ span > .”</ span >
< em > Molecular Ecology Resources</ em > 16 (1): 176– < a href = "https://doi.org/10.1111/1755-0998.12428" > https://doi.org/10.1111/1755-0998.12428</ a > .
</ div >
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< div id = "ref-cock2010sanger" class = "csl-entry" role = "doc-biblioentry" >
Cock, Peter JA, Christopher J Fields, Naohisa Goto, Michael L Heuer, and
Peter M Rice. 2010. < span > “The Sanger FASTQ File Format for Sequences
with Quality Scores, and the Solexa/Illumina FASTQ Variants.”</ span >
< em > Nucleic Acids Research</ em > 38 (6): 1767–
</ div >
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< div id = "ref-Lipman1985-hw" class = "csl-entry" role = "doc-biblioentry" >
Lipman, D J, and W R Pearson. 1985. < span > “< span class = "nocase" > Rapid
and sensitive protein similarity searches</ span > .”</ span >
< em > Science</ em > 227 (4693): 1435– < a href = "http://www.ncbi.nlm.nih.gov/pubmed/2983426" > http://www.ncbi.nlm.nih.gov/pubmed/2983426</ a > .
</ div >
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< div id = "ref-Riaz2011-gn" class = "csl-entry" role = "doc-biblioentry" >
Riaz, Tiayyba, Wasim Shehzad, Alain Viari, François Pompanon, Pierre
Taberlet, and Eric Coissac. 2011. < span > “< span class = "nocase" > ecoPrimers: inference of new DNA barcode markers from
whole genome sequence analysis</ span > .”</ span > < em > Nucleic Acids
Research</ em > 39 (21): e145. < a href = "https://doi.org/10.1093/nar/gkr732" > https://doi.org/10.1093/nar/gkr732</ a > .
</ div >
< div id = "ref-Seguritan2001-tg" class = "csl-entry" role = "doc-biblioentry" >
Seguritan, V, and F Rohwer. 2001. < span > “< span class = "nocase" > FastGroup:
a program to dereplicate libraries of 16S rDNA sequences</ span > .”</ span >
< em > BMC Bioinformatics</ em > 2 (October): 9. < a href = "https://doi.org/10.1186/1471-2105-2-9" > https://doi.org/10.1186/1471-2105-2-9</ a > .
</ div >
< div id = "ref-Shehzad2012-pn" class = "csl-entry" role = "doc-biblioentry" >
Shehzad, Wasim, Tiayyba Riaz, Muhammad A Nawaz, Christian Miquel, Carole
Poillot, Safdar A Shah, Francois Pompanon, Eric Coissac, and Pierre
Taberlet. 2012. < span > “< span class = "nocase" > Carnivore diet analysis
based on next-generation sequencing: Application to the leopard cat
(Prionailurus bengalensis) in Pakistan</ span > .”</ span > < em > Molecular
Ecology</ em > 21 (8): 1951– < a href = "https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x" > https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x</ a > .
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