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refactoring of the file chunck writing

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This commit is contained in:
Eric Coissac
2024-11-29 18:15:03 +01:00
parent 69ef1758a2
commit 00b0edc15a
16 changed files with 71 additions and 98 deletions
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4
pkg/obiformats/fastqseq_read.go
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@@ -296,7 +296,7 @@ func FastqChunkParser(quality_shift byte) func(string, io.Reader) (obiseq.BioSeq
}
func _ParseFastqFile(
input ChannelSeqFileChunk,
input ChannelFileChunk,
out obiiter.IBioSequence,
quality_shift byte,
) {
@@ -326,7 +326,7 @@ func ReadFastq(reader io.Reader, options ...WithOption) (obiiter.IBioSequence, e
buff := make([]byte, 1024*1024)
chkchan := ReadSeqFileChunk(
chkchan := ReadFileChunk(
opt.Source(),
reader,
buff,