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Refactoring related to iterators

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This commit is contained in:
Eric Coissac
2022-11-16 17:13:03 +01:00
parent 6f853da9df
commit 09fc426b67
29 changed files with 95 additions and 93 deletions
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10
pkg/obiformats/fastseq_write_fasta.go
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@@ -61,7 +61,7 @@ func FormatFastaBatch(batch obiiter.BioSequenceBatch, formater FormatHeader) []b
return bs.Bytes()
}
func WriteFastaBatch(iterator obiiter.IBioSequenceBatch,
func WriteFasta(iterator obiiter.IBioSequenceBatch,
file io.Writer,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
opt := MakeOptions(options)
@@ -136,13 +136,13 @@ func WriteFastaBatch(iterator obiiter.IBioSequenceBatch,
return newIter, nil
}
func WriteFastaBatchToStdout(iterator obiiter.IBioSequenceBatch,
func WriteFastaToStdout(iterator obiiter.IBioSequenceBatch,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
options = append(options, OptionDontCloseFile())
return WriteFastaBatch(iterator, os.Stdout, options...)
return WriteFasta(iterator, os.Stdout, options...)
}
func WriteFastaBatchToFile(iterator obiiter.IBioSequenceBatch,
func WriteFastaToFile(iterator obiiter.IBioSequenceBatch,
filename string,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
@@ -155,5 +155,5 @@ func WriteFastaBatchToFile(iterator obiiter.IBioSequenceBatch,
options = append(options, OptionCloseFile())
return WriteFastaBatch(iterator, file, options...)
return WriteFasta(iterator, file, options...)
}