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Refactoring related to iterators

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This commit is contained in:
Eric Coissac
2022-11-16 17:13:03 +01:00
parent 6f853da9df
commit 09fc426b67
29 changed files with 95 additions and 93 deletions
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pkg/obitools/obipairing/options.go
+2 -2
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@@ -47,12 +47,12 @@ func OptionSet(options *getoptions.GetOpt) {
}
func IBatchPairedSequence() (obiiter.IPairedBioSequenceBatch, error) {
forward, err := obiconvert.ReadBioSequencesBatch(_ForwardFiles...)
forward, err := obiconvert.ReadBioSequences(_ForwardFiles...)
if err != nil {
return obiiter.NilIPairedBioSequenceBatch, err
}
reverse, err := obiconvert.ReadBioSequencesBatch(_ReverseFiles...)
reverse, err := obiconvert.ReadBioSequences(_ReverseFiles...)
if err != nil {
return obiiter.NilIPairedBioSequenceBatch, err
}