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Change the API of workers

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Former-commit-id: 9b07306edd8cf28266f86f95823948fa99d39ea9
This commit is contained in:
Eric Coissac
2024-03-02 16:03:46 -04:00
parent 4a0b20484f
commit 0f3871d203
19 changed files with 194 additions and 120 deletions
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6
pkg/obitools/obiclean/obiclean.go
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@@ -60,7 +60,7 @@ func annotateOBIClean(dataset obiseq.BioSequenceSlice,
sample map[string]*([]*seqPCR),
tag, NAValue string) obiiter.IBioSequence {
batchsize := 1000
var annot = func(data obiseq.BioSequenceSlice) obiseq.BioSequenceSlice {
var annot = func(data obiseq.BioSequenceSlice) (obiseq.BioSequenceSlice, error) {
for _, s := range data {
status := Status(s)
@@ -87,11 +87,11 @@ func annotateOBIClean(dataset obiseq.BioSequenceSlice,
annotation["obiclean_samplecount"] = head + internal + singleton
}
return data
return data, nil
}
iter := obiiter.IBatchOver(dataset, batchsize)
riter := iter.MakeISliceWorker(annot)
riter := iter.MakeISliceWorker(annot, false)
return riter
}