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many changes ;-)

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Former-commit-id: cb4aea844e960e4af4dc673ebc8eec49a7d12b13
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coissac committed 2023-12-05 15:28:29 +01:00
1 parent 03bef6461d
commit 0f8066d367
39 files changed
+951797 -198
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pkg/obitools/obilandmark/obilandmark.go
+3
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@@ -124,6 +124,9 @@ func CLISelectLandmarkSequences(iterator obiiter.IBioSequence) obiiter.IBioSeque
}
// classes, centers := obistats.Kmeans(&seqworld, n_landmark, &initialCenters)
classifier := obistats.MakeKmeansClustering(&seqworld, n_landmark, obistats.DefaultRG())
_, centers, inertia, converged := classifier.Run(1000, 0.001)
intertia := classifier.Inertia()
_, centers, inertia, converged := obistats.Kmeans(&seqworld, n_landmark, 0.001, &initialCenters)
dist_centers := 0.0