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Patch type mismatch in apat C library

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This commit is contained in:
Eric Coissac
2025-04-23 16:14:10 +02:00
parent c0ecaf90ab
commit 13ff892ac9
4 changed files with 15 additions and 15 deletions
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14
pkg/obiapat/obiapat.c Normal file → Executable file
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@@ -149,9 +149,9 @@ char *LowerSequence(char *seq)
char *cseq;
for (cseq = seq ; *cseq ; cseq++)
if (IS_UPPER(*cseq))
if (IS_UPPER(*cseq)) {
*cseq = TO_LOWER(*cseq);
}
return seq;
}
@@ -299,14 +299,14 @@ int32_t delete_apatseq(SeqPtr pseq,
return 1;
}
PatternPtr buildPattern(const char *pat, int32_t error_max, uint8_t hasIndel,
Pattern *buildPattern(const char *pat, int32_t error_max, uint8_t hasIndel,
int *errno, char **errmsg)
{
PatternPtr pattern;
Pattern *pattern;
int32_t patlen;
int32_t patlen2;
patlen = strlen(pat);
patlen = (int32_t)strlen(pat);
patlen2 = lenPattern(pat);
pattern = ECOMALLOC(sizeof(Pattern) + // Space for struct Pattern
@@ -341,10 +341,10 @@ PatternPtr buildPattern(const char *pat, int32_t error_max, uint8_t hasIndel,
}
PatternPtr complementPattern(PatternPtr pat, int *errno,
Pattern *complementPattern(Pattern *pat, int *errno,
char **errmsg)
{
PatternPtr pattern;
Pattern *pattern;
pattern = ECOMALLOC(sizeof(Pattern) +
sizeof(char) * strlen(pat->cpat) + 1 +