diff --git a/pkg/obitools/obiconvert/sequence_reader.go b/pkg/obitools/obiconvert/sequence_reader.go index aff14fd..d05c881 100644 --- a/pkg/obitools/obiconvert/sequence_reader.go +++ b/pkg/obitools/obiconvert/sequence_reader.go @@ -68,6 +68,8 @@ func ExpandListOfFiles(check_ext bool, filenames ...string) ([]string, error) { strings.HasSuffix(path, "seq.gz") || strings.HasSuffix(path, "gb") || strings.HasSuffix(path, "gb.gz") || + strings.HasSuffix(path, "gbff") || + strings.HasSuffix(path, "gbff.gz") || strings.HasSuffix(path, "dat") || strings.HasSuffix(path, "dat.gz") || strings.HasSuffix(path, "ecopcr") || @@ -204,7 +206,7 @@ func CLIReadBioSequences(filenames ...string) (obiiter.IBioSequence, error) { iterator = iterator.PairTo(ip) } } else { - iterator = obiiter.NilIBioSequence + return obiiter.NilIBioSequence, fmt.Errorf("no sequence files found in the provided paths") } }