obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-12-10 09:40:27 +00:00
Code Issues Packages Projects Releases Wiki Activity

Add automatic garbage collection on ApatPattern

Browse Source
This commit is contained in:
Eric Coissac
2022-01-24 17:26:30 +01:00
parent 703eb62819
commit 251d3be923
10 changed files with 119 additions and 92 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
cmd/obitools/obipairing/main.go
View File

@@ -7,6 +7,7 @@ import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obimultiplex"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obipairing"
)
@@ -28,7 +29,7 @@ func main() {
trace.Start(ftrace)
defer trace.Stop()
optionParser := obioptions.GenerateOptionParser(obipairing.OptionSet)
optionParser := obioptions.GenerateOptionParser(obimultiplex.OptionSet)
optionParser(os.Args)
pairs, _ := obipairing.IBatchPairedSequence()
@@ -36,6 +37,7 @@ func main() {
obipairing.GapPenality(),
obipairing.Delta(),
obipairing.MinOverlap(),
obipairing.MinIdentity(),
obipairing.WithStats(),
obioptions.ParallelWorkers(),
)