obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-12-08 16:50:27 +00:00
Code Issues Packages Projects Releases Wiki Activity

Add the possibility to look for patterns allowing indels.

Browse Source 
Former-commit-id: 0599c2b0ad16df086dbdb08e491503870d8904be
This commit is contained in:
Eric Coissac
2023-03-20 15:28:24 +07:00
parent 5fbe52368c
commit 27d6c60e25
14 changed files with 674 additions and 219 deletions
Download Patch File Download Diff File Expand all files Collapse all files

5
pkg/obiapat/apat.h
View File

@@ -151,10 +151,7 @@ int32_t ManberNoErr (Seq *pseq , Pattern *ppat, int32_t patnum,int32_t beg
int32_t ManberSub (Seq *pseq , Pattern *ppat, int32_t patnum,int32_t begin,int32_t length);
int32_t ManberIndel (Seq *pseq , Pattern *ppat, int32_t patnum,int32_t begin,int32_t length);
int32_t ManberAll (Seq *pseq , Pattern *ppat, int32_t patnum,int32_t begin,int32_t length);
int32_t NwsPatAlign (Seq *pseq , Pattern *ppat, int32_t nerr ,
int32_t *reslen , int32_t *reserr);
/* apat_sys.c */
int32_t NwsPatAlign (Seq *pseq , Pattern *ppat, int32_t nerr, int32_t begin, int32_t *reslen, int32_t *reserr); /* apat_sys.c */
float UserCpuTime (int32_t reset);
float SysCpuTime (int32_t reset);