reduce the memory impact of obiuniq.

2026-02-03 23:00:32 +00:00 · 2024-11-27 13:30:16 +01:00
parent d29a56dcbf
commit 40fb4e9767
9 changed files with 145 additions and 8 deletions
--- a/pkg/obitools/obiconvert/sequence_reader.go
+++ b/pkg/obitools/obiconvert/sequence_reader.go
@@ -99,6 +99,8 @@ func CLIReadBioSequences(filenames ...string) (obiiter.IBioSequence, error) {
 		opts = append(opts, obiformats.OptionsFastSeqHeaderParser(obiformats.ParseGuessedFastSeqHeader))
 	}

+	opts = append(opts, obiformats.OptionsReadQualities(obioptions.CLIReadQualities()))
+
 	nworkers := obioptions.CLIReadParallelWorkers()
 	if nworkers < 2 {
 		nworkers = 2