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Merge pull request #70 from metabarcoding/push-kuwnszsxmxpn

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Refactor chunk processing and update version commit
This commit is contained in:
coissac
2026-01-14 18:47:17 +01:00
committed by GitHub
parent f55dd553c7 0678181023
commit 52244cdb64
2 changed files with 10 additions and 10 deletions
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6
pkg/obichunk/chunk_on_disk.go
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@@ -120,7 +120,6 @@ func ISequenceChunkOnDisk(iterator obiiter.IBioSequence,
if dereplicate { if dereplicate {
u := make(map[string]*obiseq.BioSequence) u := make(map[string]*obiseq.BioSequence)
var source string var source string
var chunk obiseq.BioSequenceSlice
for iseq.Next() { for iseq.Next() {
batch := iseq.Get() batch := iseq.Get()
@@ -135,15 +134,16 @@ func ISequenceChunkOnDisk(iterator obiiter.IBioSequence,
u[sstring] = seq u[sstring] = seq
} }
} }
}
chunk = obiseq.MakeBioSequenceSlice(len(u)) chunk := obiseq.MakeBioSequenceSlice(len(u))
i := 0 i := 0
for _, seq := range u { for _, seq := range u {
chunk[i] = seq chunk[i] = seq
i++
} }
}
newIter.Push(obiiter.MakeBioSequenceBatch(source, order, chunk)) newIter.Push(obiiter.MakeBioSequenceBatch(source, order, chunk))
} else { } else {

2
pkg/obioptions/version.go
View File

@@ -8,7 +8,7 @@ import (
// corresponds to the last commit, and not the one when the file will be // corresponds to the last commit, and not the one when the file will be
// commited // commited
var _Commit = "547135c" var _Commit = "f55dd55"
var _Version = "Release 4.4.0" var _Version = "Release 4.4.0"
// Version returns the version of the obitools package. // Version returns the version of the obitools package.