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Update of obipcr and homogenization of logging

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Former-commit-id: 46abf47c19ace5248042c02cf1f81d9f6c12eb10
This commit is contained in:
Eric Coissac
2024-05-16 15:18:30 +02:00
parent 61be8a55b1
commit 55ce36f329
27 changed files with 345 additions and 58 deletions
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3
pkg/obiformats/fastseq_write_fastq.go
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@@ -62,9 +62,8 @@ func WriteFastq(iterator obiiter.IBioSequence,
file io.WriteCloser,
options ...WithOption) (obiiter.IBioSequence, error) {
iterator = iterator.Rebatch(1000)
opt := MakeOptions(options)
iterator = iterator.Rebatch(opt.BatchSize())
file, _ = obiutils.CompressStream(file, opt.CompressedFile(), opt.CloseFile())