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A global version of a Slice pool

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This commit is contained in:
Eric Coissac
2022-01-16 00:21:42 +01:00
parent e1b7e1761c
commit 576a9f4d2d
11 changed files with 227 additions and 149 deletions
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4
pkg/obitools/obipairing/pairing.go
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@@ -123,7 +123,7 @@ func AssemblePESequences(seqA, seqB obiseq.BioSequence,
func IAssemblePESequencesBatch(iterator obiseq.IPairedBioSequenceBatch,
gap, delta, overlapMin int, withStats bool, sizes ...int) obiseq.IBioSequenceBatch {
nworkers := runtime.NumCPU() - 1
nworkers := runtime.NumCPU() * 3 / 2
buffsize := iterator.BufferSize()
if len(sizes) > 0 {
@@ -185,7 +185,7 @@ func IAssemblePESequencesBatch(iterator obiseq.IPairedBioSequenceBatch,
newIter.Done()
}
log.Printf("Start of the sequence Pairing")
log.Printf("Start of the sequence Pairing using %d workers\n", nworkers)
for i := 0; i < nworkers-1; i++ {
go f(iterator.Split(), i)