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Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.

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Eric Coissac
2025-03-25 16:44:46 +01:00
parent 2ab6f67d58
commit 5a3705b6bb
52 changed files with 151 additions and 90 deletions
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pkg/obialign/dnamatrix.go
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@@ -117,7 +117,7 @@ func _MatchScoreRatio(QF, QR byte) (float64, float64) {
term1 := _Logaddexp(qF, qR)
term2 := _Logdiffexp(term1, qF+qR)
// log.Warnf("MatchScoreRatio: %v, %v , %v, %v", QF, QR, term1, term2)
// obilog.Warnf("MatchScoreRatio: %v, %v , %v, %v", QF, QR, term1, term2)
match_logp := _Log1mexp(term2 + l3 - l4)
match_score := match_logp - _Log1mexp(match_logp)