obitools/obitools4
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A first functional version of obiclean

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This commit is contained in:
Eric Coissac
2022-08-20 18:01:07 +02:00
parent a07d348aea
commit 5dd835d3e7
16 changed files with 1091 additions and 8 deletions
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22
cmd/obitools/obiclean/main.go Normal file
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package main
import (
"os"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiclean"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
)
func main() {
optionParser := obioptions.GenerateOptionParser(obiclean.OptionSet)
_, args, _ := optionParser(os.Args)
fs, _ := obiconvert.ReadBioSequencesBatch(args...)
cleaned := obiclean.IOBIClean(fs)
obiconvert.WriteBioSequencesBatch(cleaned, true)
}