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Merge obiminion and obiconsensus

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Former-commit-id: 49d65d671e9fe4454de60c20507c3d8df6e9c51c
This commit is contained in:
Eric Coissac
2024-05-14 17:53:32 +02:00
parent 7fcb0538a3
commit 61be8a55b1
7 changed files with 359 additions and 539 deletions
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6
cmd/obitools/obiconsensus/main.go
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@@ -16,7 +16,6 @@ func main() {
optionParser := obioptions.GenerateOptionParser(obiconsensus.OptionSet)
_, args := optionParser(os.Args)
obiconvert.SetFullFileBatch()
fs, err := obiconvert.CLIReadBioSequences(args...)
@@ -25,8 +24,9 @@ func main() {
os.Exit(1)
}
consensus := obiconsensus.Consensus(fs)
obiconvert.CLIWriteBioSequences(consensus, true)
cleaned := obiconsensus.CLIOBIMinion(fs)
obiconvert.CLIWriteBioSequences(cleaned, true)
obiiter.WaitForLastPipe()