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correction of several small bugs

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This commit is contained in:
Eric Coissac
2024-09-03 06:08:07 -03:00
parent 373464cb06
commit 65ae82622e
22 changed files with 770 additions and 79 deletions
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23
pkg/obiapat/obiapat.c
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@@ -137,6 +137,28 @@ char *reverseSequence(char *str,char isPattern)
return str;
}
/* -------------------------------------------- */
/* lowercase sequence */
/* -------------------------------------------- */
#define IS_UPPER(c) (((c) >= 'A') && ((c) <= 'A'))
#define TO_LOWER(c) ((c) - 'A' + 'a')
char *LowerSequence(char *seq)
{
char *cseq;
for (cseq = seq ; *cseq ; cseq++)
if (IS_UPPER(*cseq))
*cseq = TO_LOWER(*cseq);
return seq;
}
#undef IS_UPPER
#undef TO_LOWER
char *ecoComplementPattern(char *nucAcSeq)
{
return reverseSequence(LXBioSeqComplement(nucAcSeq),1);
@@ -165,6 +187,7 @@ void UpperSequence(char *seq)
/* -------------------------------------------- */
/* encode sequence */
/* IS_UPPER is slightly faster than isupper */