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Patch a bug on compressed output

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This commit is contained in:
Eric Coissac
2025-02-05 14:18:24 +01:00
parent ceca33998b
commit 773e54965d
8 changed files with 44 additions and 7 deletions
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pkg/obitools/obiconvert/options.go
-4
View File
@@ -163,10 +163,6 @@ func CLIOutputFormat() string {
}
}
func CLICompressed() bool {
return __compressed__
}
func CLISkipEmpty() bool {
return __skip_empty__
}
pkg/obitools/obiconvert/sequence_writer.go
+1 -1
View File
@@ -58,7 +58,7 @@ func CLIWriteBioSequences(iterator obiiter.IBioSequence,
opts = append(opts, obiformats.OptionsParallelWorkers(nworkers))
opts = append(opts, obiformats.OptionsBatchSize(obidefault.BatchSize()))
opts = append(opts, obiformats.OptionsCompressed(CLICompressed()))
opts = append(opts, obiformats.OptionsCompressed(obidefault.CompressOutput()))
var err error