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introduce obidefault

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This commit is contained in:
Eric Coissac
2025-01-27 17:12:45 +01:00
parent 0a567f621c
commit 7c4042df6b
69 changed files with 505 additions and 479 deletions
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7
cmd/obitools/obipairing/main.go
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@@ -5,6 +5,7 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obipairing"
@@ -33,8 +34,8 @@ func main() {
optionParser(os.Args)
obioptions.SetStrictReadWorker(2)
obioptions.SetStrictWriteWorker(2)
obidefault.SetStrictReadWorker(2)
obidefault.SetStrictWriteWorker(2)
pairs, err := obipairing.CLIPairedSequence()
if err != nil {
@@ -51,7 +52,7 @@ func main() {
obipairing.CLIFastMode(),
obipairing.CLIFastRelativeScore(),
obipairing.CLIWithStats(),
obioptions.CLIParallelWorkers(),
obidefault.ParallelWorkers(),
)
obiconvert.CLIWriteBioSequences(paired, true)