introduce obidefault

This commit is contained in:
Eric Coissac committed 2025-01-27 17:12:45 +01:00
1 parent 0a567f621c
commit 7c4042df6b
69 files changed
+505 -479

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+2 -2
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@@ -4,7 +4,7 @@ import (
"fmt"
"sync"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
)
@@ -74,7 +74,7 @@ func (dist *IDistribute) Classifier() *obiseq.BioSequenceClassifier {
// It ensures that the outputs are closed and cleaned up once
// processing is complete.
func (iterator IBioSequence) Distribute(class *obiseq.BioSequenceClassifier, sizes ...int) IDistribute {
batchsize := obioptions.CLIBatchSize()
batchsize := obidefault.BatchSize()
outputs := make(map[int]IBioSequence, 100)
slices := make(map[int]*obiseq.BioSequenceSlice, 100)