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introduce obidefault

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This commit is contained in:
Eric Coissac
2025-01-27 17:12:45 +01:00
parent 0a567f621c
commit 7c4042df6b
69 changed files with 505 additions and 479 deletions
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4
pkg/obitools/obiannotate/obiannotate.go
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@@ -7,8 +7,8 @@ import (
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiapat"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obicorazick"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitax"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obigrep"
@@ -345,7 +345,7 @@ func CLIAnnotationPipeline() obiiter.Pipeable {
worker := CLIAnnotationWorker()
annotator := obiseq.SeqToSliceConditionalWorker(predicate, worker, false)
f := obiiter.SliceWorkerPipe(annotator, false, obioptions.CLIParallelWorkers())
f := obiiter.SliceWorkerPipe(annotator, false, obidefault.ParallelWorkers())
return f
}