introduce obidefault

This commit is contained in:
Eric Coissac committed 2025-01-27 17:12:45 +01:00
1 parent 0a567f621c
commit 7c4042df6b
69 files changed
+505 -479

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@@ -4,8 +4,8 @@ import (
"fmt"
"sort"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"github.com/dlclark/regexp2"
)
@@ -168,7 +168,7 @@ func CLIAnnotateMicrosat(iterator obiiter.IBioSequence) obiiter.IBioSequence {
CLIMinFlankLength(),
CLIReoriented())
newIter = iterator.MakeIWorker(worker, false, obioptions.CLIParallelWorkers())
newIter = iterator.MakeIWorker(worker, false, obidefault.ParallelWorkers())
return newIter.FilterEmpty()