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introduce obidefault

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This commit is contained in:
Eric Coissac
2025-01-27 17:12:45 +01:00
parent 0a567f621c
commit 7c4042df6b
69 changed files with 505 additions and 479 deletions
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pkg/obitools/obipairing/pairing.go
+2 -2
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@@ -6,8 +6,8 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obialign"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)
@@ -222,7 +222,7 @@ func IAssemblePESequencesBatch(iterator obiiter.IBioSequence,
log.Fatalln("Sequence data must be paired")
}
nworkers := obioptions.CLIParallelWorkers()
nworkers := obidefault.ParallelWorkers()
if len(sizes) > 0 {
nworkers = sizes[0]