Refactor: Extract utility function for string reversal

- Introduce `inverser_chaine()` helper to centralize logic
 - Replace inline reverse implementations across modules
This commit is contained in:
Eric Coissac committed 2026-04-16 13:42:51 +02:00
1 parent 6d469bd711
commit 7cb02ded69
3 files changed
+17 -1

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@@ -33,6 +33,7 @@ func CLIWriteSequenceCSV(iterator obiiter.IBioSequence,
CSVSequence(CLIPrintSequence()),
CSVQuality(CLIPrintQuality()),
CSVAutoColumn(CLIAutoColumns()),
CSVNAValue(CLINAValue()),
)
csvIter := NewCSVSequenceIterator(iterator, opts...)
+13 -1
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@@ -1,6 +1,7 @@
package obicsv
import (
"fmt"
"log"
"slices"
@@ -67,8 +68,19 @@ func CSVBatchFromSequences(batch obiiter.BioSequenceBatch, opt Options) obiiterc
if taxon != nil {
taxid = taxon.String()
} else if ta, ok := sequence.GetAttribute("taxid"); ok {
switch tv := ta.(type) {
case string:
taxid = tv
case int:
taxid = fmt.Sprintf("%d", tv)
case float64:
taxid = fmt.Sprintf("%d", int(tv))
default:
taxid = opt.CSVNAValue()
}
} else {
taxid = sequence.Taxid()
taxid = opt.CSVNAValue()
}
record["taxid"] = taxid