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Update version and improve release note generation

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Update version from 4.4.11 to 4.4.12

- Bump version in version.go
- Enhance release note generation in Makefile to use JSON output from orla and fallback to raw output if JSON parsing fails
- Improve test script to verify minimum super k-mer length is >= k (default k=31)
This commit is contained in:
Eric Coissac
2026-02-09 09:05:47 +01:00
parent 99a8e69d10
commit 8037860518
3 changed files with 19 additions and 12 deletions
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13
obitests/obitools/obisuperkmer/test.sh
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@@ -230,19 +230,16 @@ else
((failed++))
fi
# Test 12: Verify super k-mers are shorter than or equal to parent sequences
# Test 12: Verify each super k-mer length is >= k (default k=31)
((ntest++))
# Count nucleotides in input sequences (excluding headers)
input_bases=$(grep -v "^>" "${TEST_DIR}/test_sequences.fasta" | tr -d '\n' | wc -c)
# Count nucleotides in output sequences (excluding headers)
output_bases=$(grep -v "^>" "${TMPDIR}/output_default.fasta" | tr -d '\n' | wc -c)
min_len=$(grep -v "^>" "${TMPDIR}/output_default.fasta" | awk '{print length}' | sort -n | head -1)
if [ "$output_bases" -le "$input_bases" ]
if [ "$min_len" -ge 31 ]
then
log "$MCMD: super k-mer total length <= input length OK"
log "$MCMD: all super k-mers have length >= k OK"
((success++))
else
log "$MCMD: super k-mer total length > input length - failed"
log "$MCMD: some super k-mers shorter than k ($min_len < 31) - failed"
((failed++))
fi