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Latest version of the doc in HTML

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Eric Coissac
2023-01-31 23:04:28 +01:00
parent fa6853fca1
commit 871f22b83d
15 changed files with 1775 additions and 240 deletions
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@@ -123,17 +123,22 @@ div.csl-indent {
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./commands.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">2</span>&nbsp; <span class="chapter-title">The <em>OBITools V4</em> commands</span></a>
<a href="./tutorial.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">2</span>&nbsp; <span class="chapter-title">OBITools V4 Tutorial</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./library.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">3</span>&nbsp; <span class="chapter-title">The GO <em>OBITools</em> library</span></a>
<a href="./commands.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">3</span>&nbsp; <span class="chapter-title">The <em>OBITools V4</em> commands</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./annexes.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Annexes</span></a>
<a href="./library.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">The GO <em>OBITools</em> library</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./annexes.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Annexes</span></a>
</div>
</li>
<li class="sidebar-item">
@@ -186,6 +191,25 @@ Lipman, D J, and W R Pearson. 1985. <span>“<span class="nocase">Rapid
and sensitive protein similarity searches</span>.”</span>
<em>Science</em> 227 (4693): 1435–41. <a href="http://www.ncbi.nlm.nih.gov/pubmed/2983426">http://www.ncbi.nlm.nih.gov/pubmed/2983426</a>.
</div>
<div id="ref-Riaz2011-gn" class="csl-entry" role="doc-biblioentry">
Riaz, Tiayyba, Wasim Shehzad, Alain Viari, François Pompanon, Pierre
Taberlet, and Eric Coissac. 2011. <span>“<span class="nocase">ecoPrimers: inference of new DNA barcode markers from
whole genome sequence analysis</span>.”</span> <em>Nucleic Acids
Research</em> 39 (21): e145. <a href="https://doi.org/10.1093/nar/gkr732">https://doi.org/10.1093/nar/gkr732</a>.
</div>
<div id="ref-Seguritan2001-tg" class="csl-entry" role="doc-biblioentry">
Seguritan, V, and F Rohwer. 2001. <span>“<span class="nocase">FastGroup:
a program to dereplicate libraries of 16S rDNA sequences</span>.”</span>
<em>BMC Bioinformatics</em> 2 (October): 9. <a href="https://doi.org/10.1186/1471-2105-2-9">https://doi.org/10.1186/1471-2105-2-9</a>.
</div>
<div id="ref-Shehzad2012-pn" class="csl-entry" role="doc-biblioentry">
Shehzad, Wasim, Tiayyba Riaz, Muhammad A Nawaz, Christian Miquel, Carole
Poillot, Safdar A Shah, Francois Pompanon, Eric Coissac, and Pierre
Taberlet. 2012. <span>“<span class="nocase">Carnivore diet analysis
based on next-generation sequencing: Application to the leopard cat
(Prionailurus bengalensis) in Pakistan</span>.”</span> <em>Molecular
Ecology</em> 21 (8): 1951–65. <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x">https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x</a>.
</div>
</div>
@@ -327,7 +351,7 @@ window.document.addEventListener("DOMContentLoaded", function (event) {
<nav class="page-navigation">
<div class="nav-page nav-page-previous">
<a href="./annexes.html" class="pagination-link">
<i class="bi bi-arrow-left-short"></i> <span class="nav-page-text"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Annexes</span></span>
<i class="bi bi-arrow-left-short"></i> <span class="nav-page-text"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Annexes</span></span>
</a>
</div>
<div class="nav-page nav-page-next">