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Change path of the obitools pkg

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Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
This commit is contained in:
Eric Coissac
2023-11-29 12:14:37 +01:00
parent 72ad84c2d4
commit 8d77cc4133
122 changed files with 1004 additions and 544 deletions
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10
pkg/obitools/obicleandb/obicleandb.go
View File

@@ -3,11 +3,11 @@ package obicleandb
import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obichunk"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obigrep"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obichunk"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obigrep"
)
func ICleanDB(itertator obiiter.IBioSequence) obiiter.IBioSequence {

7
pkg/obitools/obicleandb/options.go
View File

@@ -1,12 +1,11 @@
package obicleandb
import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obigrep"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obigrep"
"github.com/DavidGamba/go-getoptions"
)
var _UpdateTaxids = false
func ObicleanDBOptionSet(options *getoptions.GetOpt) {
@@ -24,4 +23,4 @@ func OptionSet(options *getoptions.GetOpt) {
func CLIUpdateTaxids() bool {
return _UpdateTaxids
}
}