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Takes into account the option parsing errors

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Former-commit-id: d0b3ed0b96a72f79f887df8fbc325427e63d7a73
This commit is contained in:
Eric Coissac
2023-03-07 11:06:08 +07:00
parent 6b52dc0700
commit 9811e440b8
15 changed files with 23 additions and 18 deletions
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13
cmd/obitools/obicsv/main.go
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@@ -1,16 +1,21 @@
package main
import (
"os"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obicsv"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
)
func main() {
// optionParser := obioptions.GenerateOptionParser(obiconvert.OptionSet)
optionParser := obioptions.GenerateOptionParser(obicsv.OptionSet)
// _, args, _ := optionParser(os.Args)
_, args := optionParser(os.Args)
// fs, _ := obiconvert.ReadBioSequences(args...)
// //obicsv.CLIWriteCSV(fs, true)
fs, _ := obiconvert.CLIReadBioSequences(args...)
obicsv.CLIWriteCSV(fs, true)
obiiter.WaitForLastPipe()