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Optimize memory allocation of the apat algorithms

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Former-commit-id: 5010c5a666b322715b3b81c1078d325e1f647ede
This commit is contained in:
Eric Coissac
2023-03-28 19:37:05 +07:00
parent 21819cd41e
commit 988ae79989
19 changed files with 117 additions and 180 deletions
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2
pkg/obiformats/fastseq_write_fasta.go
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@@ -69,7 +69,7 @@ func WriteFasta(iterator obiiter.IBioSequence,
options ...WithOption) (obiiter.IBioSequence, error) {
opt := MakeOptions(options)
iterator = iterator.Rebatch(10000)
iterator = iterator.Rebatch(1000)
file, _ = obiutils.CompressStream(file, opt.CompressedFile(), opt.CloseFile())
newIter := obiiter.MakeIBioSequence()