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<div class="sidebar-item-container">
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<a href="./tutorial.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">2</span> <span class="chapter-title">OBITools V4 Tutorial</span></a>
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<a href="./formats.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">2</span> <span class="chapter-title">File formats usable with <em>OBITools</em></span></a>
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</div>
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<div class="sidebar-item-container">
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<a href="./commands.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">3</span> <span class="chapter-title">The <em>OBITools V4</em> commands</span></a>
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<a href="./tutorial.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">3</span> <span class="chapter-title">OBITools V4 Tutorial</span></a>
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</div>
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<div class="sidebar-item-container">
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<a href="./library.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">4</span> <span class="chapter-title">The GO <em>OBITools</em> library</span></a>
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<a href="./commands.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">4</span> <span class="chapter-title">The <em>OBITools V4</em> commands</span></a>
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</div>
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</li>
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<li class="sidebar-item">
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<div class="sidebar-item-container">
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<a href="./annexes.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">5</span> <span class="chapter-title">Annexes</span></a>
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<a href="./library.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">5</span> <span class="chapter-title">The GO <em>OBITools</em> library</span></a>
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</div>
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</li>
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<li class="sidebar-item">
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<div class="sidebar-item-container">
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<a href="./annexes.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">6</span> <span class="chapter-title">Annexes</span></a>
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<div id="refs" class="references csl-bib-body hanging-indent" role="doc-bibliography">
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Andersen, Kenneth, Karen Lise Bird, Morten Rasmussen, James Haile,
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Henrik Breuning-Madsen, Kurt H Kjaer, Ludovic Orlando, M Thomas P
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Gilbert, and Eske Willerslev. 2012. <span>“<span class="nocase">Meta-barcoding of <span class="nocase">ë</span>dirt<span class="nocase">ı́</span>DNA from soil reflects vertebrate
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biodiversity</span>.”</span> <em>Molecular Ecology</em> 21 (8): 1966–79.
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</div>
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Baldwin, Darren S, Matthew J Colloff, Gavin N Rees, Anthony A Chariton,
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Garth O Watson, Leon N Court, Diana M Hartley, et al. 2013. <span>“<span class="nocase">Impacts of inundation and drought on eukaryote
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biodiversity in semi-arid floodplain soils</span>.”</span> <em>Molecular
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Ecology</em> 22 (6): 1746–58. <a href="https://doi.org/10.1111/mec.12190">https://doi.org/10.1111/mec.12190</a>.
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</div>
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Taberlet, and Eric Coissac. 2016. <span>“<span class="nocase">obitools:
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Peter M Rice. 2010. <span>“The Sanger FASTQ File Format for Sequences
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prey DNA in faeces</span>.”</span> <em>Molecular Ecology</em> 18 (9):
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Kowalczyk, Rafał, Pierre Taberlet, Eric Coissac, Alice Valentini,
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Christian Miquel, Tomasz Kamiński, and Jan M Wójcik. 2011. <span>“<span class="nocase">Influence of management practices on large herbivore
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diet—Case of European bison in Bia<span class="nocase">ł</span>owie<span class="nocase">ż</span>a Primeval Forest (Poland)</span>.”</span>
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<em>Forest Ecology and Management</em> 261 (4): 821–28. <a href="https://doi.org/10.1016/j.foreco.2010.11.026">https://doi.org/10.1016/j.foreco.2010.11.026</a>.
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</div>
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Parducci, Laura, Tina Jørgensen, Mari Mette Tollefsrud, Ellen Elverland,
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Torbjørn Alm, Sonia L Fontana, K D Bennett, et al. 2012. <span>“<span class="nocase">Glacial survival of boreal trees in northern
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Scandinavia</span>.”</span> <em>Science</em> 335 (6072): 1083–86. <a href="https://doi.org/10.1126/science.1216043">https://doi.org/10.1126/science.1216043</a>.
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Riaz, Tiayyba, Wasim Shehzad, Alain Viari, François Pompanon, Pierre
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Taberlet, and Eric Coissac. 2011. <span>“<span class="nocase">ecoPrimers: inference of new DNA barcode markers from
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whole genome sequence analysis</span>.”</span> <em>Nucleic Acids
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Research</em> 39 (21): e145. <a href="https://doi.org/10.1093/nar/gkr732">https://doi.org/10.1093/nar/gkr732</a>.
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Schloss, Patrick D, Sarah L Westcott, Thomas Ryabin, Justine R Hall,
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<span>“<span class="nocase">Introducing mothur: open-source,
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platform-independent, community-supported software for describing and
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comparing microbial communities</span>.”</span> <em>Applied and
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Environmental Microbiology</em> 75 (23): 7537–41. <a href="https://doi.org/10.1128/AEM.01541-09">https://doi.org/10.1128/AEM.01541-09</a>.
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Seguritan, V, and F Rohwer. 2001. <span>“<span class="nocase">FastGroup:
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a program to dereplicate libraries of 16S rDNA sequences</span>.”</span>
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@@ -210,6 +265,47 @@ based on next-generation sequencing: Application to the leopard cat
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(Prionailurus bengalensis) in Pakistan</span>.”</span> <em>Molecular
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Ecology</em> 21 (8): 1951–65. <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x">https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x</a>.
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2006. <span>“<span class="nocase">Microbial diversity in the deep sea
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Willerslev, et al. 2010. <span>“<span class="nocase">Using
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Resources</em> 10 (6): 1009–18. <a href="https://doi.org/10.1111/j.1755-0998.2010.02855.x">https://doi.org/10.1111/j.1755-0998.2010.02855.x</a>.
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Von Stedingk, et al. 2012. <span>“<span class="nocase">DNA from soil
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mirrors plant taxonomic and growth form diversity</span>.”</span>
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<em>Molecular Ecology</em> 21 (15): 3647–55. <a href="https://doi.org/10.1111/j.1365-294X.2012.05545.x">https://doi.org/10.1111/j.1365-294X.2012.05545.x</a>.
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</div>
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<div class="nav-page nav-page-previous">
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<i class="bi bi-arrow-left-short"></i> <span class="nav-page-text"><span class="chapter-number">5</span> <span class="chapter-title">Annexes</span></span>
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<i class="bi bi-arrow-left-short"></i> <span class="nav-page-text"><span class="chapter-number">6</span> <span class="chapter-title">Annexes</span></span>
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