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Introduce new sequence matching logic and corpus handling

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This commit introduces the core matching functionality, including parallel corpus loading, the `Corpus` data structure, and implementations for `matchNaive` and `matchApat`. It also defines new matching rules, variant handling, and comprehensive unit and integration tests to validate the new logic and parameter handling.
This commit is contained in:
Eric Coissac committed 2026-11-03 22:35:51 +11:00
1 parent f75e774bd5
commit ad065f6853
10 files changed
+2265 -59
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pkg/obiprimer/testdata/ecoprimers_Cyprinidae.words.tsv
Vendored
+1208
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File diff suppressed because it is too large. Load diff
pkg/obiprimer/testdata/ecoprimers_Teleostei.words.tsv
Vendored
+255
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@@ -0,0 +1,255 @@
AAAACTCGTGCCAGCCAC 3891 0
AAACCCAAAGGACTTGGC 3890 0
AAACGAACCCTTAATAGC 3875 0
AAACTCGTGCCAGCCACC 3894 0
AAACTGGGATTAGATACC 3896 0
AAAGTCCTACGTGATCTG 3901 0
AAATCATGATGCAAAAGG 3894 0
AACAAACGAACCCTTAAT 3888 0
AACATCGAGGTCGTAAAC 3893 0
AACATGGTAAGTGTACCG 3894 0
AACCAAAAACTCTTGGTG 3854 0
AACCCAAAGGACTTGGCG 3888 0
AACCCTTAATAGCGGCTG 3858 0
AACCGCGGTGGCTGGCAC 3896 0
AACGAACCCTTAATAGCG 3860 0
AACGATTAAAGTCCTACG 3700 0
AACGTCAGGTCGAGGTGT 3894 0
AACTCAGATCACGTAGGA 3899 0
AACTCGTGCCAGCCACCG 3893 0
AACTGGGATTAGATACCC 3896 0
AAGAGTTTTTGGTTCCTA 3848 0
AAGCCTCGCCTGTTTACC 3876 0
AAGGGTTCGTTTGTTCAA 3889 0
AAGGTAGCGCAATCACTT 3889 0
AAGTCCTACGTGATCTGA 3900 0
AAGTCGTAACATGGTAAG 3893 0
AAGTGCACCTTCCGGTAC 3888 0
AAGTGTACCGGAAGGTGC 3889 0
AATAGCGGCTGCACCATT 3839 0
AATCACTTGTCTTTTAAA 3856 0
AATCATGATGCAAAAGGT 3893 0
AATCCAGGTCAGTTTCTA 3903 0
AATCGTTGAACAAACGAA 3876 0
AATGTAGCCCATTTCTTC 3871 0
ACAAACGAACCCTTAATA 3885 0
ACAAACTGGGATTAGATA 3893 0
ACAAGTGATTGCGCTACC 3889 0
ACACACCGCCCGTCACTC 3891 0
ACACCGCCCGTCACTCTC 3890 0
ACACTTACCATGTTACGA 3893 0
ACATCCTAATGGTGCAGC 3858 0
ACATCGAGGTCGTAAACC 3894 0
ACATGGTAAGTGTACCGG 3894 0
ACCAAAAACTCTTGGTGC 3875 0
ACCAAGAGTTTTTGGTTC 3857 0
ACCATGTTACGACTTGCC 3891 0
ACCATTAGGATGTCCTGA 3891 0
ACCCAAAGGACTTGGCGG 3886 0
ACCCGTCTCTGTGGCAAA 3892 0
ACCCTAGGGATAACAGCG 3895 0
ACCCTTAATAGCGGCTGC 3861 0
ACCGCCCGTCACTCTCCC 3893 0
ACCGCGGTGGCTGGCACG 3895 0
ACCGGAAGGTGCACTTGG 3887 0
ACCTCGATGTTGGATCAG 3891 0
ACCTTCCGGTACACTTAC 3893 0
ACGAACCCTTAATAGCGG 3859 0
ACGACCTCGATGTTGGAT 3889 0
ACGATTAAAGTCCTACGT 3701 0
ACGTCAGGTCGAGGTGTA 3894 0
ACGTGATCTGAGTTCAGA 3901 0
ACTCAGATCACGTAGGAC 3899 0
ACTCGTGCCAGCCACCGC 3894 0
ACTCTTTTGCCACAGAGA 3867 0
ACTGGGATTAGATACCCC 3896 0
ACTTACCATGTTACGACT 3894 0
ACTTTAATCGTTGAACAA 3876 0
AGAACAGGCTCCTCTAGG 3893 0
AGACAAGTGATTGCGCTA 3883 0
AGAGGAGCCTGTTCTAGA 3876 0
AGAGTGACGGGCGGTGTG 3890 0
AGAGTTTTTGGTTCCTAA 3851 0
AGATAGAAACTGACCTGG 3900 0
AGATCACGTAGGACTTTA 3901 0
AGCCGCTATTAAGGGTTC 3856 0
AGCCTCGCCTGTTTACCA 3889 0
AGCCTGTTCTAGAACCGA 3871 0
AGCGGCTGCACCATTAGG 3846 0
AGGAACCAAAAACTCTTG 3842 0
AGGACATCCTAATGGTGC 3866 0
AGGACTTTAATCGTTGAA 3688 0
AGGAGCCTGTTCTAGAAC 3874 0
AGGATGTCCTGATCCAAC 3897 0
AGGCAAGTCGTAACATGG 3868 0
AGGCGATGTTTTTGGTAA 3894 0
AGGGATAACAGCGCAATC 3896 0
AGGGGAGGCAAGTCGTAA 3890 0
AGGGGGTTTACGACCTCG 3894 0
AGGGTTCGTTTGTTCAAC 3888 0
AGGTAGCGCAATCACTTG 3888 0
AGTCCTACGTGATCTGAG 3900 0
AGTGGGGTATCTAATCCC 3896 0
AGTTACCCTAGGGATAAC 3895 0
AGTTTTTGGTTCCTAAGA 3848 0
ATAGAAACTGACCTGGAT 3901 0
ATAGCGGCTGCACCATTA 3837 0
ATAGTGGGGTATCTAATC 3895 0
ATCACGTAGGACTTTAAT 3880 0
ATCACTTGTCTTTTAAAT 3856 0
ATCAGGACATCCTAATGG 3892 0
ATCATGATGCAAAAGGTA 3894 0
ATCCTAATGGTGCAGCCG 3852 0
ATCGAGGTCGTAAACCCC 3894 0
ATCGGTTCTAGAACAGGC 3862 0
ATCGTTGAACAAACGAAC 3877 0
ATCTGAGTTCAGACCGGA 3902 0
ATGATGCAAAAGGTACGA 3891 0
ATGGTAAGTGTACCGGAA 3895 0
ATGGTGCAGCCGCTATTA 3840 0
ATGTAGCCCATTTCTTCC 3871 0
ATGTCCTGATCCAACATC 3892 0
ATGTTACGACTTGCCTCC 3864 0
ATGTTGGATCAGGACATC 3893 0
ATGTTTTTGGTAAACAGG 3887 0
ATTAGATACCCCACTATG 3896 0
ATTAGGATGTCCTGATCC 3893 0
ATTGCGCTGTTATCCCTA 3896 0
CAAAAACTCTTGGTGCAA 3886 0
CAAACGAACCCTTAATAG 3882 0
CAAACTGGGATTAGATAC 3895 0
CAACATCGAGGTCGTAAA 3894 0
CAACGATTAAAGTCCTAC 3691 0
CAAGTCGTAACATGGTAA 3893 0
CAAGTGCACCTTCCGGTA 3888 0
CACCATTAGGATGTCCTG 3890 0
CACCGCCCGTCACTCTCC 3888 0
CACCTTCCGGTACACTTA 3891 0
CACGTAGGACTTTAATCG 3702 0
CACTCTTTTGCCACAGAG 3856 0
CACTTACCATGTTACGAC 3894 0
CATCCTAATGGTGCAGCC 3852 0
CATCGAGGTCGTAAACCC 3894 0
CATGATGCAAAAGGTACG 3890 0
CATGGTAAGTGTACCGGA 3894 0
CATGTTACGACTTGCCTC 3866 0
CATTAGGATGTCCTGATC 3893 0
CCAAAAACTCTTGGTGCA 3883 0
CCAACATCGAGGTCGTAA 3894 0
CCAAGAGTTTTTGGTTCC 3844 0
CCACTCTTTTGCCACAGA 3879 0
CCCACTCTTTTGCCACAG 3879 0
CCCGTCTCTGTGGCAAAA 3894 0
CCCTAGGGATAACAGCGC 3898 0
CCCTTAATAGCGGCTGCA 3853 0
CCGCCCGTCACTCTCCCC 3890 0
CCGCGGTGGCTGGCACGA 3895 0
CCGGTAAAACTCGTGCCA 3847 0
CCGGTCTGAACTCAGATC 3904 0
CCGTCTCTGTGGCAAAAG 3894 0
CCTACGTGATCTGAGTTC 3899 0
CCTAGGGATAACAGCGCA 3896 0
CCTCGATGTTGGATCAGG 3892 0
CCTCGCCTGTTTACCAAA 3892 0
CCTGTTCTAGAACCGATA 3862 0
CCTTAATAGCGGCTGCAC 3850 0
CCTTCCGGTACACTTACC 3893 0
CGAACCCTTAATAGCGGC 3855 0
CGACCTCGATGTTGGATC 3890 0
CGACGGCGGTATATAGGC 3890 0
CGATGTTGGATCAGGACA 3892 0
CGATGTTTTTGGTAAACA 3886 0
CGCCTGTTTACCAAAAAC 3889 0
CGCGGTGGCTGGCACGAG 3894 0
CGCTTAGCTGTTAACTAA 3864 0
CGGTAAAACTCGTGCCAG 3856 0
CGGTCTGAACTCAGATCA 3904 0
CGGTTCTAGAACAGGCTC 3873 0
CGTAACATGGTAAGTGTA 3892 0
CGTCAGGTCGAGGTGTAG 3893 0
CGTCTCTGTGGCAAAAGA 3891 0
CGTGATCTGAGTTCAGAC 3902 0
CGTTGAACAAACGAACCC 3887 0
CGTTTGTTCAACGATTAA 3877 0
CTAAATCATGATGCAAAA 3896 0
CTAATGGTGCAGCCGCTA 3840 0
CTACGTGATCTGAGTTCA 3899 0
CTAGAACAGGCTCCTCTA 3877 0
CTAGAGGAGCCTGTTCTA 3891 0
CTAGGGATAACAGCGCAA 3897 0
CTCCGGTCTGAACTCAGA 3903 0
CTCGATGTTGGATCAGGA 3892 0
CTCGCCTGTTTACCAAAA 3892 0
CTCGTACCTTTTGCATCA 3889 0
CTCTTTTGCCACAGAGAC 3869 0
CTGAACTCAGATCACGTA 3900 0
CTGCACCATTAGGATGTC 3861 0
CTGGGATTAGATACCCCA 3895 0
CTGTTATCCCTAGGGTAA 3897 0
CTGTTTACCAAAAACATC 3886 0
CTTAATAGCGGCTGCACC 3848 0
CTTAGCTGTTAACTAAGA 3878 0
CTTAGGAACCAAAAACTC 3847 0
CTTAGTTAACAGCTAAGC 3875 0
CTTCCGGTACACTTACCA 3891 0
CTTGGATTTGCACCAAGA 3899 0
CTTTAATCGTTGAACAAA 3876 0
CTTTTGCATCATGATTTA 3896 0
GAACAAACGAACCCTTAA 3890 0
GAAGGAACTCGGCAAACA 3889 0
GACAAGTGATTGCGCTAC 3889 0
GACCTCGATGTTGGATCA 3890 0
GACTTTAATCGTTGAACA 3686 0
GAGGAGCCTGTTCTAGAA 3876 0
GAGGCGATGTTTTTGGTA 3893 0
GATAGAAACTGACCTGGA 3900 0
GATCACGTAGGACTTTAA 3900 0
GATTAAAGTCCTACGTGA 3704 0
GCAAGTCGTAACATGGTA 3891 0
GCATAGTGGGGTATCTAA 3896 0
GCCGGTAAAACTCGTGCC 3827 0
GCCTCGCCTGTTTACCAA 3890 0
GCCTGTTTACCAAAAACA 3889 0
GCGATGTTTTTGGTAAAC 3888 0
GCGCTTAGCTGTTAACTA 3899 0
GCGGCTGCACCATTAGGA 3850 0
GCTAAATCATGATGCAAA 3893 0
GCTACACCTCGACCTGAC 3893 0
GCTGGCACGAGTTTTACC 3881 0
GCTGTTATCCCTAGGGTA 3896 0
GGACATCCTAATGGTGCA 3865 0
GGACTTTAATCGTTGAAC 3687 0
GGAGCCTGTTCTAGAACC 3874 0
GGATGTCCTGATCCAACA 3895 0
GGATTAGATACCCCACTA 3896 0
GGATTGCGCTGTTATCCC 3895 0
GGCGATGTTTTTGGTAAA 3890 0
GGCTGGCACGAGTTTTAC 3880 0
GGGAAGAAATGGGCTACA 3872 0
GGGAGGCAAGTCGTAACA 3891 0
GGGGAGGCAAGTCGTAAC 3890 0
GGGGGTTTACGACCTCGA 3894 0
GGTACACTTACCATGTTA 3893 0
GGTCTGAACTCAGATCAC 3902 0
GGTCTTAGGAACCAAAAA 3862 0
GGTTCGTTTGTTCAACGA 3877 0
GTAACATGGTAAGTGTAC 3893 0
GTACCTTTTGCATCATGA 3892 0
GTCCTGATCCAACATCGA 3892 0
GTCTTAGGAACCAAAAAC 3853 0
GTGGGGTATCTAATCCCA 3895 0
GTTACCCTAGGGATAACA 3896 0
GTTTGTTCAACGATTAAA 3877 0
TAAAACTCGTGCCAGCCA 3887 0
TAACCGCGGTGGCTGGCA 3895 0
TAAGGGTTCGTTTGTTCA 3889 0
TAATCGTTGAACAAACGA 3876 0
TACGACCTCGATGTTGGA 3892 0
TAGGACTTTAATCGTTGA 3689 0
TAGGATGTCCTGATCCAA 3897 0
TCCCACTCTTTTGCCACA 3866 0
TCGCCTGTTTACCAAAAA 3891 0
TGGATCAGGACATCCTAA 3894 0
TGGTCTTAGGAACCAAAA 3862 0
TGGTGCAGCCGCTATTAA 3847 0
TTGGTCTTAGGAACCAAA 3862 0
1 AAAACTCGTGCCAGCCAC 3891 0
2 AAACCCAAAGGACTTGGC 3890 0
3 AAACGAACCCTTAATAGC 3875 0
4 AAACTCGTGCCAGCCACC 3894 0
5 AAACTGGGATTAGATACC 3896 0
6 AAAGTCCTACGTGATCTG 3901 0
7 AAATCATGATGCAAAAGG 3894 0
8 AACAAACGAACCCTTAAT 3888 0
9 AACATCGAGGTCGTAAAC 3893 0
10 AACATGGTAAGTGTACCG 3894 0
11 AACCAAAAACTCTTGGTG 3854 0
12 AACCCAAAGGACTTGGCG 3888 0
13 AACCCTTAATAGCGGCTG 3858 0
14 AACCGCGGTGGCTGGCAC 3896 0
15 AACGAACCCTTAATAGCG 3860 0
16 AACGATTAAAGTCCTACG 3700 0
17 AACGTCAGGTCGAGGTGT 3894 0
18 AACTCAGATCACGTAGGA 3899 0
19 AACTCGTGCCAGCCACCG 3893 0
20 AACTGGGATTAGATACCC 3896 0
21 AAGAGTTTTTGGTTCCTA 3848 0
22 AAGCCTCGCCTGTTTACC 3876 0
23 AAGGGTTCGTTTGTTCAA 3889 0
24 AAGGTAGCGCAATCACTT 3889 0
25 AAGTCCTACGTGATCTGA 3900 0
26 AAGTCGTAACATGGTAAG 3893 0
27 AAGTGCACCTTCCGGTAC 3888 0
28 AAGTGTACCGGAAGGTGC 3889 0
29 AATAGCGGCTGCACCATT 3839 0
30 AATCACTTGTCTTTTAAA 3856 0
31 AATCATGATGCAAAAGGT 3893 0
32 AATCCAGGTCAGTTTCTA 3903 0
33 AATCGTTGAACAAACGAA 3876 0
34 AATGTAGCCCATTTCTTC 3871 0
35 ACAAACGAACCCTTAATA 3885 0
36 ACAAACTGGGATTAGATA 3893 0
37 ACAAGTGATTGCGCTACC 3889 0
38 ACACACCGCCCGTCACTC 3891 0
39 ACACCGCCCGTCACTCTC 3890 0
40 ACACTTACCATGTTACGA 3893 0
41 ACATCCTAATGGTGCAGC 3858 0
42 ACATCGAGGTCGTAAACC 3894 0
43 ACATGGTAAGTGTACCGG 3894 0
44 ACCAAAAACTCTTGGTGC 3875 0
45 ACCAAGAGTTTTTGGTTC 3857 0
46 ACCATGTTACGACTTGCC 3891 0
47 ACCATTAGGATGTCCTGA 3891 0
48 ACCCAAAGGACTTGGCGG 3886 0
49 ACCCGTCTCTGTGGCAAA 3892 0
50 ACCCTAGGGATAACAGCG 3895 0
51 ACCCTTAATAGCGGCTGC 3861 0
52 ACCGCCCGTCACTCTCCC 3893 0
53 ACCGCGGTGGCTGGCACG 3895 0
54 ACCGGAAGGTGCACTTGG 3887 0
55 ACCTCGATGTTGGATCAG 3891 0
56 ACCTTCCGGTACACTTAC 3893 0
57 ACGAACCCTTAATAGCGG 3859 0
58 ACGACCTCGATGTTGGAT 3889 0
59 ACGATTAAAGTCCTACGT 3701 0
60 ACGTCAGGTCGAGGTGTA 3894 0
61 ACGTGATCTGAGTTCAGA 3901 0
62 ACTCAGATCACGTAGGAC 3899 0
63 ACTCGTGCCAGCCACCGC 3894 0
64 ACTCTTTTGCCACAGAGA 3867 0
65 ACTGGGATTAGATACCCC 3896 0
66 ACTTACCATGTTACGACT 3894 0
67 ACTTTAATCGTTGAACAA 3876 0
68 AGAACAGGCTCCTCTAGG 3893 0
69 AGACAAGTGATTGCGCTA 3883 0
70 AGAGGAGCCTGTTCTAGA 3876 0
71 AGAGTGACGGGCGGTGTG 3890 0
72 AGAGTTTTTGGTTCCTAA 3851 0
73 AGATAGAAACTGACCTGG 3900 0
74 AGATCACGTAGGACTTTA 3901 0
75 AGCCGCTATTAAGGGTTC 3856 0
76 AGCCTCGCCTGTTTACCA 3889 0
77 AGCCTGTTCTAGAACCGA 3871 0
78 AGCGGCTGCACCATTAGG 3846 0
79 AGGAACCAAAAACTCTTG 3842 0
80 AGGACATCCTAATGGTGC 3866 0
81 AGGACTTTAATCGTTGAA 3688 0
82 AGGAGCCTGTTCTAGAAC 3874 0
83 AGGATGTCCTGATCCAAC 3897 0
84 AGGCAAGTCGTAACATGG 3868 0
85 AGGCGATGTTTTTGGTAA 3894 0
86 AGGGATAACAGCGCAATC 3896 0
87 AGGGGAGGCAAGTCGTAA 3890 0
88 AGGGGGTTTACGACCTCG 3894 0
89 AGGGTTCGTTTGTTCAAC 3888 0
90 AGGTAGCGCAATCACTTG 3888 0
91 AGTCCTACGTGATCTGAG 3900 0
92 AGTGGGGTATCTAATCCC 3896 0
93 AGTTACCCTAGGGATAAC 3895 0
94 AGTTTTTGGTTCCTAAGA 3848 0
95 ATAGAAACTGACCTGGAT 3901 0
96 ATAGCGGCTGCACCATTA 3837 0
97 ATAGTGGGGTATCTAATC 3895 0
98 ATCACGTAGGACTTTAAT 3880 0
99 ATCACTTGTCTTTTAAAT 3856 0
100 ATCAGGACATCCTAATGG 3892 0
101 ATCATGATGCAAAAGGTA 3894 0
102 ATCCTAATGGTGCAGCCG 3852 0
103 ATCGAGGTCGTAAACCCC 3894 0
104 ATCGGTTCTAGAACAGGC 3862 0
105 ATCGTTGAACAAACGAAC 3877 0
106 ATCTGAGTTCAGACCGGA 3902 0
107 ATGATGCAAAAGGTACGA 3891 0
108 ATGGTAAGTGTACCGGAA 3895 0
109 ATGGTGCAGCCGCTATTA 3840 0
110 ATGTAGCCCATTTCTTCC 3871 0
111 ATGTCCTGATCCAACATC 3892 0
112 ATGTTACGACTTGCCTCC 3864 0
113 ATGTTGGATCAGGACATC 3893 0
114 ATGTTTTTGGTAAACAGG 3887 0
115 ATTAGATACCCCACTATG 3896 0
116 ATTAGGATGTCCTGATCC 3893 0
117 ATTGCGCTGTTATCCCTA 3896 0
118 CAAAAACTCTTGGTGCAA 3886 0
119 CAAACGAACCCTTAATAG 3882 0
120 CAAACTGGGATTAGATAC 3895 0
121 CAACATCGAGGTCGTAAA 3894 0
122 CAACGATTAAAGTCCTAC 3691 0
123 CAAGTCGTAACATGGTAA 3893 0
124 CAAGTGCACCTTCCGGTA 3888 0
125 CACCATTAGGATGTCCTG 3890 0
126 CACCGCCCGTCACTCTCC 3888 0
127 CACCTTCCGGTACACTTA 3891 0
128 CACGTAGGACTTTAATCG 3702 0
129 CACTCTTTTGCCACAGAG 3856 0
130 CACTTACCATGTTACGAC 3894 0
131 CATCCTAATGGTGCAGCC 3852 0
132 CATCGAGGTCGTAAACCC 3894 0
133 CATGATGCAAAAGGTACG 3890 0
134 CATGGTAAGTGTACCGGA 3894 0
135 CATGTTACGACTTGCCTC 3866 0
136 CATTAGGATGTCCTGATC 3893 0
137 CCAAAAACTCTTGGTGCA 3883 0
138 CCAACATCGAGGTCGTAA 3894 0
139 CCAAGAGTTTTTGGTTCC 3844 0
140 CCACTCTTTTGCCACAGA 3879 0
141 CCCACTCTTTTGCCACAG 3879 0
142 CCCGTCTCTGTGGCAAAA 3894 0
143 CCCTAGGGATAACAGCGC 3898 0
144 CCCTTAATAGCGGCTGCA 3853 0
145 CCGCCCGTCACTCTCCCC 3890 0
146 CCGCGGTGGCTGGCACGA 3895 0
147 CCGGTAAAACTCGTGCCA 3847 0
148 CCGGTCTGAACTCAGATC 3904 0
149 CCGTCTCTGTGGCAAAAG 3894 0
150 CCTACGTGATCTGAGTTC 3899 0
151 CCTAGGGATAACAGCGCA 3896 0
152 CCTCGATGTTGGATCAGG 3892 0
153 CCTCGCCTGTTTACCAAA 3892 0
154 CCTGTTCTAGAACCGATA 3862 0
155 CCTTAATAGCGGCTGCAC 3850 0
156 CCTTCCGGTACACTTACC 3893 0
157 CGAACCCTTAATAGCGGC 3855 0
158 CGACCTCGATGTTGGATC 3890 0
159 CGACGGCGGTATATAGGC 3890 0
160 CGATGTTGGATCAGGACA 3892 0
161 CGATGTTTTTGGTAAACA 3886 0
162 CGCCTGTTTACCAAAAAC 3889 0
163 CGCGGTGGCTGGCACGAG 3894 0
164 CGCTTAGCTGTTAACTAA 3864 0
165 CGGTAAAACTCGTGCCAG 3856 0
166 CGGTCTGAACTCAGATCA 3904 0
167 CGGTTCTAGAACAGGCTC 3873 0
168 CGTAACATGGTAAGTGTA 3892 0
169 CGTCAGGTCGAGGTGTAG 3893 0
170 CGTCTCTGTGGCAAAAGA 3891 0
171 CGTGATCTGAGTTCAGAC 3902 0
172 CGTTGAACAAACGAACCC 3887 0
173 CGTTTGTTCAACGATTAA 3877 0
174 CTAAATCATGATGCAAAA 3896 0
175 CTAATGGTGCAGCCGCTA 3840 0
176 CTACGTGATCTGAGTTCA 3899 0
177 CTAGAACAGGCTCCTCTA 3877 0
178 CTAGAGGAGCCTGTTCTA 3891 0
179 CTAGGGATAACAGCGCAA 3897 0
180 CTCCGGTCTGAACTCAGA 3903 0
181 CTCGATGTTGGATCAGGA 3892 0
182 CTCGCCTGTTTACCAAAA 3892 0
183 CTCGTACCTTTTGCATCA 3889 0
184 CTCTTTTGCCACAGAGAC 3869 0
185 CTGAACTCAGATCACGTA 3900 0
186 CTGCACCATTAGGATGTC 3861 0
187 CTGGGATTAGATACCCCA 3895 0
188 CTGTTATCCCTAGGGTAA 3897 0
189 CTGTTTACCAAAAACATC 3886 0
190 CTTAATAGCGGCTGCACC 3848 0
191 CTTAGCTGTTAACTAAGA 3878 0
192 CTTAGGAACCAAAAACTC 3847 0
193 CTTAGTTAACAGCTAAGC 3875 0
194 CTTCCGGTACACTTACCA 3891 0
195 CTTGGATTTGCACCAAGA 3899 0
196 CTTTAATCGTTGAACAAA 3876 0
197 CTTTTGCATCATGATTTA 3896 0
198 GAACAAACGAACCCTTAA 3890 0
199 GAAGGAACTCGGCAAACA 3889 0
200 GACAAGTGATTGCGCTAC 3889 0
201 GACCTCGATGTTGGATCA 3890 0
202 GACTTTAATCGTTGAACA 3686 0
203 GAGGAGCCTGTTCTAGAA 3876 0
204 GAGGCGATGTTTTTGGTA 3893 0
205 GATAGAAACTGACCTGGA 3900 0
206 GATCACGTAGGACTTTAA 3900 0
207 GATTAAAGTCCTACGTGA 3704 0
208 GCAAGTCGTAACATGGTA 3891 0
209 GCATAGTGGGGTATCTAA 3896 0
210 GCCGGTAAAACTCGTGCC 3827 0
211 GCCTCGCCTGTTTACCAA 3890 0
212 GCCTGTTTACCAAAAACA 3889 0
213 GCGATGTTTTTGGTAAAC 3888 0
214 GCGCTTAGCTGTTAACTA 3899 0
215 GCGGCTGCACCATTAGGA 3850 0
216 GCTAAATCATGATGCAAA 3893 0
217 GCTACACCTCGACCTGAC 3893 0
218 GCTGGCACGAGTTTTACC 3881 0
219 GCTGTTATCCCTAGGGTA 3896 0
220 GGACATCCTAATGGTGCA 3865 0
221 GGACTTTAATCGTTGAAC 3687 0
222 GGAGCCTGTTCTAGAACC 3874 0
223 GGATGTCCTGATCCAACA 3895 0
224 GGATTAGATACCCCACTA 3896 0
225 GGATTGCGCTGTTATCCC 3895 0
226 GGCGATGTTTTTGGTAAA 3890 0
227 GGCTGGCACGAGTTTTAC 3880 0
228 GGGAAGAAATGGGCTACA 3872 0
229 GGGAGGCAAGTCGTAACA 3891 0
230 GGGGAGGCAAGTCGTAAC 3890 0
231 GGGGGTTTACGACCTCGA 3894 0
232 GGTACACTTACCATGTTA 3893 0
233 GGTCTGAACTCAGATCAC 3902 0
234 GGTCTTAGGAACCAAAAA 3862 0
235 GGTTCGTTTGTTCAACGA 3877 0
236 GTAACATGGTAAGTGTAC 3893 0
237 GTACCTTTTGCATCATGA 3892 0
238 GTCCTGATCCAACATCGA 3892 0
239 GTCTTAGGAACCAAAAAC 3853 0
240 GTGGGGTATCTAATCCCA 3895 0
241 GTTACCCTAGGGATAACA 3896 0
242 GTTTGTTCAACGATTAAA 3877 0
243 TAAAACTCGTGCCAGCCA 3887 0
244 TAACCGCGGTGGCTGGCA 3895 0
245 TAAGGGTTCGTTTGTTCA 3889 0
246 TAATCGTTGAACAAACGA 3876 0
247 TACGACCTCGATGTTGGA 3892 0
248 TAGGACTTTAATCGTTGA 3689 0
249 TAGGATGTCCTGATCCAA 3897 0
250 TCCCACTCTTTTGCCACA 3866 0
251 TCGCCTGTTTACCAAAAA 3891 0
252 TGGATCAGGACATCCTAA 3894 0
253 TGGTCTTAGGAACCAAAA 3862 0
254 TGGTGCAGCCGCTATTAA 3847 0
255 TTGGTCTTAGGAACCAAA 3862 0