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Produce less weird crash on non existing files

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Former-commit-id: 74bb27bd53c685be530632994bd2ba24c1f362e1
This commit is contained in:
Eric Coissac
2023-03-07 17:34:25 +07:00
parent fbfed52508
commit b3922c3896
21 changed files with 147 additions and 32 deletions
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8
cmd/obitools/obigrep/main.go
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@@ -2,6 +2,7 @@ package main
import (
"os"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
@@ -34,7 +35,12 @@ func main() {
_, args := optionParser(os.Args)
sequences, _ := obiconvert.CLIReadBioSequences(args...)
sequences, err := obiconvert.CLIReadBioSequences(args...)
if err != nil {
log.Errorf("Cannot open file (%v)",err)
os.Exit(1)
}
selected := obigrep.CLIFilterSequence(sequences)
obiconvert.CLIWriteBioSequences(selected, true)
obiiter.WaitForLastPipe()