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Adds option to tune the pairing of the sequences in obipairing and some stats to the results
Former-commit-id: a6cf9cb4d4ab20a433a2534fd7d11cd3ca8ebbaa
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@@ -14,7 +14,7 @@ import (
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func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
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gap float64, delta, minOverlap int,
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minIdentity float64,
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minIdentity float64, fastAlign, fastScoreRel,
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withStats bool) obiiter.IBioSequence {
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if !iterator.IsPaired() {
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@@ -50,7 +50,8 @@ func IPCRTagPESequencesBatch(iterator obiiter.IBioSequence,
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B := A.PairedWith()
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consensus := obipairing.AssemblePESequences(
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A.Copy(), B.ReverseComplement(false),
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gap, delta, minOverlap, minIdentity, withStats, true, arena,
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gap, delta, minOverlap, minIdentity, withStats, true,
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fastAlign, fastScoreRel, arena,
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)
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consensus, err = ngsfilter.ExtractBarcode(consensus, true)
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