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Refactor build workflow and update version

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Update GitHub Actions workflow to use setup-go v5 and align with latest tooling practices.

Update version to 4.4.15 in version.txt and pkg/obioptions/version.go.

Add comprehensive documentation for the canonical super-kmer strategy, including:
- Analysis of index v1 limitations
- Experimental observations on super-kmer efficiency
- Detailed pipeline for building v3 index
- Explanation of minimizer-canonization
- Description of unitig construction and frequency filtering
- Storage format specifications for v3
- Aho-Corasick matching implementation

This change introduces a major improvement in index compactness and performance through the use of canonical super-kmers, unitigs, and efficient storage formats.
This commit is contained in:
Eric Coissac
2026-02-11 06:31:10 +01:00
parent 1ce5da9bee
commit c30a22d356
5 changed files with 767 additions and 12 deletions
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pkg/obioptions/version.go
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@@ -3,7 +3,7 @@ package obioptions
// Version is automatically updated by the Makefile from version.txt
// The patch number (third digit) is incremented on each push to the repository
var _Version = "Release 4.4.14"
var _Version = "Release 4.4.15"
// Version returns the version of the obitools package.
//