obitools/obitools4
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small code refactoring

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coissac committed 2022-08-23 15:08:35 +02:00
1 parent d2f4919bc8
commit d04161a0fb
2 files changed
+7 -17
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pkg/obitools/obidistribute/distribute.go
+3 -3
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@@ -13,7 +13,7 @@ func DistributeSequence(sequences obiiter.IBioSequenceBatch) {
opts := make([]obiformats.WithOption, 0, 10)
switch obiconvert.OutputFastHeaderFormat() {
switch obiconvert.CLIOutputFastHeaderFormat() {
case "json":
log.Println("On output use JSON headers")
opts = append(opts, obiformats.OptionsFastSeqHeaderFormat(obiformats.FormatFastSeqJsonHeader))
@@ -34,11 +34,11 @@ func DistributeSequence(sequences obiiter.IBioSequenceBatch) {
opts = append(opts, obiformats.OptionsBufferSize(obioptions.CLIBufferSize()))
opts = append(opts, obiformats.OptionsBatchSize(obioptions.CLIBatchSize()))
opts = append(opts, obiformats.OptionsQualityShift(obiconvert.OutputQualityShift()))
opts = append(opts, obiformats.OptionsQualityShift(obiconvert.CLIOutputQualityShift()))
var formater obiformats.SequenceBatchWriterToFile
switch obiconvert.OutputFormat() {
switch obiconvert.CLIOutputFormat() {
case "fastq":
formater = obiformats.WriteFastqBatchToFile
case "fasta":