From a92393dd51a4e6d3e97055b2b74e63b8398441d2 Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Mon, 13 Apr 2026 14:07:48 +0200 Subject: [PATCH 1/2] :arrow_up: update go.mod dependencies and improve error messages - Bump github.com/buger/jsonparser from v1.1.1 to v1.2 - Add error details in log.Fatalf calls for better debugging --- go.mod | 2 +- go.sum | 2 ++ pkg/obilua/lua.go | 6 +++--- 3 files changed, 6 insertions(+), 4 deletions(-) diff --git a/go.mod b/go.mod index 5a02ac4..86a7baf 100644 --- a/go.mod +++ b/go.mod @@ -6,7 +6,7 @@ require ( github.com/DavidGamba/go-getoptions v0.33.0 github.com/PaesslerAG/gval v1.2.4 github.com/barkimedes/go-deepcopy v0.0.0-20220514131651-17c30cfc62df - github.com/buger/jsonparser v1.1.1 + github.com/buger/jsonparser v1.1.2 github.com/chen3feng/stl4go v0.1.1 github.com/dlclark/regexp2 v1.11.5 github.com/goccy/go-json v0.10.6 diff --git a/go.sum b/go.sum index cc856ec..43b4e10 100644 --- a/go.sum +++ b/go.sum @@ -8,6 +8,8 @@ github.com/barkimedes/go-deepcopy v0.0.0-20220514131651-17c30cfc62df h1:GSoSVRLo github.com/barkimedes/go-deepcopy v0.0.0-20220514131651-17c30cfc62df/go.mod h1:hiVxq5OP2bUGBRNS3Z/bt/reCLFNbdcST6gISi1fiOM= github.com/buger/jsonparser v1.1.1 h1:2PnMjfWD7wBILjqQbt530v576A/cAbQvEW9gGIpYMUs= github.com/buger/jsonparser v1.1.1/go.mod h1:6RYKKt7H4d4+iWqouImQ9R2FZql3VbhNgx27UK13J/0= +github.com/buger/jsonparser v1.1.2 h1:frqHqw7otoVbk5M8LlE/L7HTnIq2v9RX6EJ48i9AxJk= +github.com/buger/jsonparser v1.1.2/go.mod h1:6RYKKt7H4d4+iWqouImQ9R2FZql3VbhNgx27UK13J/0= github.com/chen3feng/stl4go v0.1.1 h1:0L1+mDw7pomftKDruM23f1mA7miavOj6C6MZeadzN2Q= github.com/chen3feng/stl4go v0.1.1/go.mod h1:5ml3psLgETJjRJnMbPE+JiHLrCpt+Ajc2weeTECXzWU= github.com/chengxilo/virtualterm v1.0.4 h1:Z6IpERbRVlfB8WkOmtbHiDbBANU7cimRIof7mk9/PwM= diff --git a/pkg/obilua/lua.go b/pkg/obilua/lua.go index 017c902..1bfa07f 100644 --- a/pkg/obilua/lua.go +++ b/pkg/obilua/lua.go @@ -91,7 +91,7 @@ func LuaWorker(proto *lua.FunctionProto) obiseq.SeqWorker { err := interpreter.PCall(0, lua.MultRet, nil) if err != nil { - log.Fatalf("Error in executing the lua script") + log.Fatalf("Error in executing the lua script: %v", err) } result := interpreter.GetGlobal("worker") @@ -173,7 +173,7 @@ func LuaProcessor(iterator obiiter.IBioSequence, name, program string, breakOnEr err = interpreter.PCall(0, lua.MultRet, nil) if err != nil { - log.Fatalf("Error in executing the lua script") + log.Fatalf("Error in executing the lua script: %v", err) } result := interpreter.GetGlobal("begin") @@ -198,7 +198,7 @@ func LuaProcessor(iterator obiiter.IBioSequence, name, program string, breakOnEr err = interpreter.PCall(0, lua.MultRet, nil) if err != nil { - log.Fatalf("Error in executing the lua script") + log.Fatalf("Error in executing the lua script: %v", err) } result := interpreter.GetGlobal("finish") From fec078c04c8d645f2919abb03c061d842b5c858f Mon Sep 17 00:00:00 2001 From: Eric Coissac Date: Mon, 13 Apr 2026 14:08:16 +0200 Subject: [PATCH 2/2] Release 4.4.32 --- pkg/obioptions/version.go | 2 +- version.txt | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pkg/obioptions/version.go b/pkg/obioptions/version.go index 40d78c3..122a9b4 100644 --- a/pkg/obioptions/version.go +++ b/pkg/obioptions/version.go @@ -3,7 +3,7 @@ package obioptions // Version is automatically updated by the Makefile from version.txt // The patch number (third digit) is incremented on each push to the repository -var _Version = "Release 4.4.31" +var _Version = "Release 4.4.32" // Version returns the version of the obitools package. // diff --git a/version.txt b/version.txt index e23f190..d5fc18f 100644 --- a/version.txt +++ b/version.txt @@ -1 +1 @@ -4.4.31 +4.4.32