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Introduce sequence roles and filtering logic

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Implement new data structures for corpus management, multi-match filtering, and barcode resolution.
This commit is contained in:
Eric Coissac committed 2026-11-03 22:50:02 +11:00
1 parent d7d63f315c
commit d6dd39f878
22 files changed
+1083 -342
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pkg/obiprimer/words_test.go
+6 -6
View File
@@ -27,18 +27,18 @@ func TestSelectionRoles(t *testing.T) {
}{
{"nothing set: everything is an example",
Selection{}, map[string]Role{"r1": Example, "x1": Example, "i1": Example, "o1": Example}},
{"restrict only: the rest is dropped",
{"restrict only: the rest are non-targets",
Selection{Restrict: idPrefix("r")},
map[string]Role{"r1": Example, "x1": Ignored, "i1": Ignored, "o1": Ignored}},
map[string]Role{"r1": Example, "x1": Other, "i1": Other, "o1": Other}},
{"restrict + ignore",
Selection{Restrict: idPrefix("r"), Ignore: idPrefix("i")},
map[string]Role{"r1": Example, "i1": CounterExample, "o1": Ignored}},
map[string]Role{"r1": Example, "i1": CounterExample, "o1": Other}},
{"exception inside restrict becomes a counterexample",
Selection{Restrict: idPrefix("r").Or(idPrefix("x")), Except: idPrefix("x")},
map[string]Role{"r1": Example, "x1": CounterExample, "o1": Ignored}},
map[string]Role{"r1": Example, "x1": CounterExample, "o1": Other}},
{"example wins over ignore when both match",
Selection{Restrict: idPrefix("r"), Ignore: idPrefix("r").Or(idPrefix("i"))},
map[string]Role{"r1": Example, "i1": CounterExample, "o1": Ignored}},
map[string]Role{"r1": Example, "i1": CounterExample, "o1": Other}},
}
for _, tc := range cases {
for id, want := range tc.want {
@@ -116,7 +116,7 @@ func TestFindStrictWords(t *testing.T) {
t.Fatal(err)
}
if res.Counts != (Counts{Examples: 10, CounterExamples: 1, Ignored: 1}) {
if res.Counts != (Counts{Examples: 10, CounterExamples: 1, Others: 1}) {
t.Fatalf("counts = %+v", res.Counts)
}
if res.MinSequences != 7 {