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A first version of obimicroasm...

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This commit is contained in:
Eric Coissac
2025-02-16 21:47:49 +01:00
parent 4774438644
commit d70b0a5b42
11 changed files with 1234 additions and 27 deletions
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42
cmd/obitools/obimicroasm/main.go Normal file
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package main
import (
"os"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiformats"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obimicroasm"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)
func main() {
// go tool pprof -http=":8000" ./obipairing ./cpu.pprof
// f, err := os.Create("cpu.pprof")
// if err != nil {
// log.Fatal(err)
// }
// pprof.StartCPUProfile(f)
// defer pprof.StopCPUProfile()
// go tool trace cpu.trace
// ftrace, err := os.Create("cpu.trace")
// if err != nil {
// log.Fatal(err)
// }
// trace.Start(ftrace)
// defer trace.Stop()
optionParser := obioptions.GenerateOptionParser(obimicroasm.OptionSet)
optionParser(os.Args)
obidefault.SetStrictReadWorker(2)
obidefault.SetStrictWriteWorker(2)
seq := obimicroasm.CLIAssemblePCR()
println(obiformats.FormatFasta(seq, obiformats.FormatFastSeqJsonHeader))
obiutils.WaitForLastPipe()
}