obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2026-03-25 13:30:52 +00:00
Code Issues Packages Projects Releases Wiki Activity

Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup

Browse Source 
Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup

This commit introduces Jaccard distance and similarity methods for KmerSet and KmerSetGroup.

For KmerSet:
- Added JaccardDistance method to compute the Jaccard distance between two KmerSets
- Added JaccardSimilarity method to compute the Jaccard similarity between two KmerSets

For KmerSetGroup:
- Added JaccardDistanceMatrix method to compute a pairwise Jaccard distance matrix
- Added JaccardSimilarityMatrix method to compute a pairwise Jaccard similarity matrix

Also includes:
- New DistMatrix implementation in pkg/obidist for storing and computing distance/similarity matrices
- Updated version handling with bump-version target in Makefile
- Added tests for all new methods
This commit is contained in:
Eric Coissac
2026-02-05 17:38:47 +01:00
parent aa2e94dd6f
commit e3c41fc11b
9 changed files with 1328 additions and 28 deletions
Download Patch File Download Diff File Expand all files Collapse all files

14
pkg/obioptions/version.go
View File

@@ -1,20 +1,14 @@
package obioptions
import (
"fmt"
)
// Version is automatically updated by the Makefile from version.txt
// The patch number (third digit) is incremented on each push to the repository
// TODO: The version number is extracted from git. This induces that the version
// corresponds to the last commit, and not the one when the file will be
// commited
var _Commit = "a43e625"
var _Version = "Release 4.4.0"
var _Version = "Release 4.4.3"
// Version returns the version of the obitools package.
//
// No parameters.
// Returns a string representing the version of the obitools package.
func VersionString() string {
return fmt.Sprintf("%s (%s)", _Version, _Commit)
return _Version
}