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Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup

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Add Jaccard distance and similarity computations for KmerSet and KmerSetGroup

This commit introduces Jaccard distance and similarity methods for KmerSet and KmerSetGroup.

For KmerSet:
- Added JaccardDistance method to compute the Jaccard distance between two KmerSets
- Added JaccardSimilarity method to compute the Jaccard similarity between two KmerSets

For KmerSetGroup:
- Added JaccardDistanceMatrix method to compute a pairwise Jaccard distance matrix
- Added JaccardSimilarityMatrix method to compute a pairwise Jaccard similarity matrix

Also includes:
- New DistMatrix implementation in pkg/obidist for storing and computing distance/similarity matrices
- Updated version handling with bump-version target in Makefile
- Added tests for all new methods
This commit is contained in:
Eric Coissac
2026-02-05 17:38:47 +01:00
parent aa2e94dd6f
commit e3c41fc11b
9 changed files with 1328 additions and 28 deletions
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version.txt Normal file
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4.4.3