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Make subseq method dealing with qualities

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This commit is contained in:
Eric Coissac
2022-02-01 18:49:32 +01:00
parent bc1d7b26a9
commit e9cdfd7e03
2 changed files with 15 additions and 4 deletions
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9
pkg/obiseq/subseq.go
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@@ -27,11 +27,20 @@ func (sequence BioSequence) Subsequence(from, to int, circular bool) (BioSequenc
newSeq = MakeEmptyBioSequence()
newSeq.Write(sequence.Sequence()[from:to])
if sequence.HasQualities() {
newSeq.WriteQualities(sequence.Qualities()[from:to])
}
newSeq.sequence.id = fmt.Sprintf("%s_sub[%d..%d]", sequence.Id(), from+1, to)
newSeq.sequence.definition = sequence.sequence.definition
} else {
newSeq, _ = sequence.Subsequence(from, sequence.Length(), false)
newSeq.Write(sequence.Sequence()[0:to])
if sequence.HasQualities() {
newSeq.WriteQualities(sequence.Qualities()[0:to])
}
}
if len(sequence.Annotations()) > 0 {